Best Alignments for T0421

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2z0hA	3.2180e-03	2z0hA/T0421-2z0hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pbrA	1.5010e-02	2pbrA/T0421-2pbrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ccjA	3.8340e-02	2ccjA/T0421-2ccjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oe0A	4.2580e-02	1oe0A/T0421-1oe0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1gtvA	6.8861e-02	1gtvA/T0421-1gtvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1nn5A	1.1689e-01	1nn5A/T0421-1nn5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2axpA	1.3753e-01	2axpA/T0421-2axpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
5tmpA	2.2100e-01	5tmpA/T0421-5tmpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1e9eA	2.9480e-01	1e9eA/T0421-1e9eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2plrA	3.0163e-01	2plrA/T0421-2plrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ukz	3.2552e-01	1ukz/T0421-1ukz-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
4tmkA	5.3013e-01	4tmkA/T0421-4tmkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
3tmkA	7.5915e-01	3tmkA/T0421-3tmkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2vp4A	1.0124e+00	2vp4A/T0421-2vp4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zm7A	1.0265e+00	1zm7A/T0421-1zm7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rz3A	1.3736e+00	1rz3A/T0421-1rz3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
1np6A	1.4923e+00	1np6A/T0421-1np6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.10
2ax4A	1.8988e+00	2ax4A/T0421-2ax4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p5zB	1.9105e+00	1p5zB/T0421-1p5zB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1kdoA	1.9393e+00	1kdoA/T0421-1kdoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001