# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.1330 1oe0A 230 0.1668 c.37.1.1 92788 2p67A 341 0.2187 2pbrA 195 0.3168 1p9rA 418 0.7021 c.37.1.11 94399 2qm8A 337 0.7444 1s4qA 228 0.8163 c.37.1.1 98507 1gtvA 214 0.8768 c.37.1.1 70537 2p5tB 253 0.8772 1rz3A 201 0.9932 c.37.1.6 98132 1np6A 174 1.161 c.37.1.10 85954 1z8fA 228 1.276 2ax4A 198 1.368 1nn5A 215 1.376 c.37.1.1 85892 2gzaA 361 1.461 2an9A 207 1.683 c.37.1.1 127037 2q8pA 260 2.077 1znwA 207 2.077 c.37.1.1 125412 5tmpA 213 2.149 c.37.1.1 31931 1s96A 219 2.283 c.37.1.1 98740 2j41A 207 2.391 2ga8A 359 2.933 1n2zA 245 3.189 c.92.2.2 79865 2pezA 179 3.390 2oap1 511 3.642 1tq6A 413 3.788 c.37.1.8 107202 1vmaA 306 3.860 a.24.13.1,c.37.1.10 108887,108888 1n4aA 252 3.968 c.92.2.2 85317 1gky 187 4.361 2og2A 359 4.548 3b9qA 302 4.822 1e9eA 215 4.886 c.37.1.1 64810 1ex7A 186 5.281 c.37.1.1 59537 2qy9A 309 6.094 2px0A 296 6.145 2vp4A 230 6.192 2ccjA 205 6.239 1sq5A 308 6.516 c.37.1.6 105882 1qhxA 178 7.123 c.37.1.3 31936 3tmkA 216 7.195 c.37.1.1 31920 2bdtA 189 7.659 c.37.1.25 128344 2ff7A 247 7.729 c.37.1.12 133377 1g6oA 330 7.796 c.37.1.11 32430 2q3fA 181 7.837 1in4A 334 8.256 a.4.5.11,c.37.1.20 62597,62598 1kdoA 227 8.474 c.37.1.1 68478 1esmA 316 8.664 c.37.1.6 31953 2cbzA 237 9.273 1njgA 250 9.538 c.37.1.20 85785 2qorA 204 9.603 2f1rA 171 9.789 4tmkA 213 11.66 c.37.1.1 31930 2pmkA 243 11.78 1zm7A 230 14.04 1kagA 173 14.34 c.37.1.2 72249 2axpA 173 14.42 c.37.1.1 127497 1qhsA 178 14.90 c.37.1.3 31938 3c8uA 208 15.20 2g09A 297 17.37 2ixeA 271 18.27 1vqoV 71 18.57 a.2.2.1 120383 1h65A 270 18.63 c.37.1.8 65640 1h1nA 305 19.44 c.1.8.3 70855 2vqeI 128 19.67 1d6jA 211 20.55 c.37.1.4 31940 1kngA 156 21.11 c.47.1.10 72777 1zu4A 320 21.74 2c95A 196 21.76 1xp3A 307 24.58 c.1.15.1 122210 1ukz 203 24.59 1s8eA 333 25.94 d.159.1.4 105368 1bif 469 27.85 2b8wA 328 28.30 2etvA 346 29.50 c.92.2.4 132372 1z6gA 218 29.88 2cxxA 190 30.02 c.37.1.8 131013 1p5zB 263 30.35 c.37.1.1 87815 1htwA 158 31.10 c.37.1.18 71083 2hf9A 226 32.04 2bwjA 199 32.58 3bifA 468 32.89 c.37.1.7,c.60.1.4 31962,34008 1xjcA 169 34.26 c.37.1.10 115387 1bouA 139 35.78 a.88.1.1 18521 2yvuA 186 35.92 1kgdA 180 36.56 c.37.1.1 68582 1dciA 275 39.47 c.14.1.3 30918 2qgnA 322 39.84 2eyuA 261 40.86 1assA 159 41.51 c.8.5.2 30818 1e4yA 214 41.69 c.37.1.1,g.41.2.1 31901,45181 2r7aA 256 42.04 2b30A 301 44.37 c.108.1.10 127759 2dri 271 44.41 1in6A 334 45.20 a.4.5.11,c.37.1.20 62601,62602 2qt1A 207 46.68 1p3jA 217 47.83 c.37.1.1,g.41.2.1 94022,94023 1axeA 374 48.09 b.35.1.2,c.2.1.1 24681,29697 1hnoA 280 49.99 c.14.1.3 61095 1fj2A 232 50.35 c.69.1.14 34720 2jerA 389 51.01 1m7gA 211 51.79 c.37.1.4 78724 1yuwA 554 52.67 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1t71A 281 53.45 d.159.1.9 112283 2dk7A 73 53.73 3b9pA 297 54.25 2hhjA 267 54.73 c.60.1.1 136497 2v26A 784 54.87 1qf9A 194 54.98 c.37.1.1 31848 1c1dA 355 55.81 c.2.1.7,c.58.1.1 30270,33918 2uubI 128 56.27 1z5zA 271 56.77 c.37.1.19 124499 1v7zA 260 57.66 c.125.1.1 100488 1yrbA 262 58.28 c.37.1.10 123915 2j00I 128 59.14 d.14.1.1 137847 1gz0A 253 59.28 c.116.1.1,d.79.3.3 76391,76392 1nksA 194 61.29 c.37.1.1 31886 1j8yF 297 62.44 a.24.13.1,c.37.1.10 62747,62748 2nq2C 253 62.62 1pujA 282 63.06 c.37.1.8 88294 1g8fA 511 63.69 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2rhmA 193 64.18 1svsA 353 64.76 c.37.1.8 106051 1t9hA 307 64.82 b.40.4.5,c.37.1.8 112358,112359 1yzyA 413 64.96 c.146.1.1 124292 1akyA 220 66.15 c.37.1.1,g.41.2.1 31896,45197 1axgA 374 66.83 b.35.1.2,c.2.1.1 24691,29707 1nsf 273 67.66 1gmlA 178 67.73 c.8.5.2 70273 1zinA 217 69.09 c.37.1.1,g.41.2.1 31915,45178 2c9oA 456 71.20 1f2tA 149 71.88 c.37.1.12 32373 1ee2A 373 72.09 b.35.1.2,c.2.1.1 24663,29679 1ji0A 240 72.42 c.37.1.12 71665 1ybdA 239 73.07 c.73.1.3 122884 1j3eA 115 73.43 d.228.1.1 103834 1a71A 374 74.17 b.35.1.2,c.2.1.1 24673,29689 1n8kA 374 74.36 b.35.1.2,c.2.1.1 80298,80299 3cnyA 301 74.42 2a1fA 247 74.84 c.73.1.3 125991 1nf2A 268 74.87 c.108.1.10 91849 1fl9A 161 76.85 c.37.1.18 70137 1ituA 369 77.71 c.1.9.7 71423 1ng1 294 78.96 1w9iA 770 80.10 2feaA 236 80.40 c.108.1.20 133327 1m2oA 768 81.16 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1jr3A 373 81.17 a.80.1.1,c.37.1.20 63245,63246 1bifA 469 82.45 c.37.1.7,c.60.1.4 31961,34003 1j8mF 297 83.18 a.24.13.1,c.37.1.10 62742,62743 2qxlA 658 84.96 2ozeA 298 85.61 1sgwA 214 86.17 c.37.1.12 105541 1mnaA 298 86.60 c.69.1.22 79322 2h8lA 252 86.80 2olrA 540 87.56 c.91.1.1,c.109.1.1 139140,139141 2pzeA 229 88.16 2bkhA 814 89.75