# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yvuA 186 0.3908 2z0hA 197 0.7217 1oe0A 230 0.8008 c.37.1.1 92788 1vmaA 306 0.9276 a.24.13.1,c.37.1.10 108887,108888 2an9A 207 1.162 c.37.1.1 127037 1kagA 173 1.191 c.37.1.2 72249 2gzaA 361 1.706 2pbrA 195 1.845 2ax4A 198 1.970 1ukz 203 2.249 5tmpA 213 2.341 c.37.1.1 31931 2axpA 173 2.395 c.37.1.1 127497 2plrA 213 3.237 2px0A 296 3.304 2pezA 179 3.656 1gtvA 214 3.811 c.37.1.1 70537 3b9qA 302 3.846 1s96A 219 3.898 c.37.1.1 98740 2qy9A 309 3.952 2rhmA 193 4.292 3tmkA 216 4.699 c.37.1.1 31920 1h65A 270 4.777 c.37.1.8 65640 2vp4A 230 4.884 2og2A 359 5.007 1rz3A 201 5.227 c.37.1.6 98132 1nn5A 215 5.303 c.37.1.1 85892 1y63A 184 6.046 c.37.1.1 116494 1yuwA 554 6.368 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 4tmkA 213 7.291 c.37.1.1 31930 2ccjA 205 7.397 2p5tB 253 7.622 1njgA 250 7.786 c.37.1.20 85785 1e9eA 215 8.372 c.37.1.1 64810 1h1nA 305 8.525 c.1.8.3 70855 1ukzA 203 8.650 c.37.1.1 31840 1p9rA 418 8.943 c.37.1.11 94399 2qm8A 337 9.292 2q8pA 260 9.340 2bwjA 199 9.727 1tq6A 413 9.757 c.37.1.8 107202 2cxxA 190 9.96 c.37.1.8 131013 1s4qA 228 11.05 c.37.1.1 98507 2c95A 196 11.41 1zm7A 230 11.46 1mnaA 298 11.54 c.69.1.22 79322 2higA 487 12.13 1mwmA 320 12.32 c.55.1.1,c.55.1.1 79580,79581 1g6oA 330 12.65 c.37.1.11 32430 2feaA 236 13.12 c.108.1.20 133327 1rkbA 173 14.87 c.37.1.1 111854 3c8uA 208 15.24 2qorA 204 15.27 2g09A 297 16.70 1fj2A 232 17.73 c.69.1.14 34720 2p67A 341 18.13 2b8wA 328 18.50 3bifA 468 18.70 c.37.1.7,c.60.1.4 31962,34008 1kay 381 18.86 1in4A 334 19.43 a.4.5.11,c.37.1.20 62597,62598 2i3dA 249 20.15 1bupA 386 20.85 c.55.1.1,c.55.1.1 33377,33378 1p5zB 263 21.49 c.37.1.1 87815 1esmA 316 21.66 c.37.1.6 31953 1z8fA 228 22.39 2ff7A 247 22.88 c.37.1.12 133377 1bif 469 23.16 1kezA 300 23.90 c.69.1.22 68546 1e4yA 214 24.15 c.37.1.1,g.41.2.1 31901,45181 1ba1 386 24.78 2cbzA 237 25.29 1bhgA 613 27.11 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1s8eA 333 27.88 d.159.1.4 105368 1r0wA 286 27.90 c.37.1.12 96754 1znwA 207 28.78 c.37.1.1 125412 1kdoA 227 29.00 c.37.1.1 68478 1htwA 158 30.16 c.37.1.18 71083 1ggvA 232 30.88 c.69.1.9 34683 1zu4A 320 32.21 1jjiA 311 33.18 c.69.1.2 66766 2bbsA 290 33.27 2ga8A 359 33.28 2pmkA 243 33.48 1kjwA 295 33.53 b.34.2.1,c.37.1.1 68643,68644 1gz0A 253 34.63 c.116.1.1,d.79.3.3 76391,76392 1yrbA 262 35.35 c.37.1.10 123915 1din 236 38.31 2ixeA 271 38.77 2hf9A 226 38.79 2r7aA 256 40.36 2pt7A 330 41.19 1ji0A 240 42.02 c.37.1.12 71665 1n2zA 245 45.29 c.92.2.2 79865 1ituA 369 46.26 c.1.9.7 71423 2bifA 469 51.54 c.37.1.7,c.60.1.4 31963,34009 2j85A 122 54.51 d.321.1.1 138133 1bifA 469 54.69 c.37.1.7,c.60.1.4 31961,34003 1axeA 374 56.31 b.35.1.2,c.2.1.1 24681,29697 1m7gA 211 57.81 c.37.1.4 78724 1mo2A 294 59.41 c.69.1.22 79331 1qhsA 178 60.41 c.37.1.3 31938 2yvaA 196 60.64 1d6jA 211 61.17 c.37.1.4 31940 2a1fA 247 61.53 c.73.1.3 125991 1odfA 290 62.08 c.37.1.6 92782 1sq5A 308 62.82 c.37.1.6 105882 1ls1A 295 62.82 a.24.13.1,c.37.1.10 78170,78171 2akaA 776 63.83 1b0uA 262 64.69 c.37.1.12 32370 1jxmA 301 64.74 b.34.2.1,c.37.1.1 67420,67421 1qf9A 194 64.96 c.37.1.1 31848 2q3fA 181 65.43 2qt1A 207 68.64 1v7zA 260 72.90 c.125.1.1 100488 1yqtA 538 73.37 1t9hA 307 73.56 b.40.4.5,c.37.1.8 112358,112359 3craA 265 75.35 1n4aA 252 77.04 c.92.2.2 85317 2r8bA 251 77.52 1q3kA 259 79.20 c.125.1.1 95693 1assA 159 79.25 c.8.5.2 30818 2zgyA 320 79.46 1zi8A 236 80.53 1x92A 199 80.69 c.80.1.3 114976 1in6A 334 80.77 a.4.5.11,c.37.1.20 62601,62602 1nsf 273 81.10 1rz2A 254 81.20 b.100.1.1 105130 1dkgD 383 81.61 c.55.1.1,c.55.1.1 33427,33428 1uf3A 228 82.16 d.159.1.6 99317 2qgnA 322 82.18 1lkxA 697 82.42 c.37.1.9 73981 2gar 212 83.28 2eyuA 261 83.46 2pt5A 168 84.29 2bneA 241 85.44 c.73.1.3 128824 2fukA 220 85.59 2bonA 332 86.47 1d0yA 761 88.25 b.34.3.1,c.37.1.9 24581,32178 1vplA 256 88.87 c.37.1.12 113966 1ceo 343 89.80 1z47A 355 89.85 1oxsC 353 89.88 b.40.6.3,c.37.1.12 87519,87520