# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 1.52e-11 2j41A 207 1.78e-11 1znwA 207 2.65e-11 c.37.1.1 125412 1z6gA 218 2.68e-11 1p5zB 263 1.63e-10 c.37.1.1 87815 2ccjA 205 1.92e-10 1z8fA 228 2.39e-10 4tmkA 213 2.69e-10 c.37.1.1 31930 2pbrA 195 3.22e-10 1kjwA 295 1.77e-09 b.34.2.1,c.37.1.1 68643,68644 1gtvA 214 1.45e-08 c.37.1.1 70537 2plrA 213 2.09e-08 1t0hB 224 6.57e-08 c.37.1.1 106208 2z0hA 197 1.30e-07 1t3lA 337 1.43e-07 b.34.2.1,c.37.1.1 106358,106359 1ex7A 186 1.85e-07 c.37.1.1 59537 2vp4A 230 2.88e-07 1ukzA 203 4.31e-07 c.37.1.1 31840 2bwjA 199 4.71e-07 1qhiA 366 6.80e-07 c.37.1.1 31860 1s4qA 228 9.93e-07 c.37.1.1 98507 1p6xA 334 1.13e-06 c.37.1.1 94195 1zm7A 230 1.50e-06 1e2kA 331 2.08e-06 c.37.1.1 31854 2axpA 173 2.11e-06 c.37.1.1 127497 1oe0A 230 4.45e-06 c.37.1.1 92788 2cdnA 201 4.78e-06 c.37.1.1 130289 2c95A 196 6.62e-06 1ukz 203 7.61e-06 1of1A 376 8.00e-06 c.37.1.1 103924 1ki9A 192 1.04e-05 c.37.1.1 84404 1qhxA 178 1.22e-05 c.37.1.3 31936 1knqA 175 2.10e-05 c.37.1.17 72786 1y63A 184 2.27e-05 c.37.1.1 116494 2qgnA 322 3.56e-05 1qf9A 194 4.18e-05 c.37.1.1 31848 1ckeA 227 6.40e-05 c.37.1.1 31846 1xrjA 261 6.53e-05 c.37.1.6 122256 1kgdA 180 7.30e-05 c.37.1.1 68582 3tmkA 216 0.000110 c.37.1.1 31920 1vhtA 218 0.000127 c.37.1.1 100700 1e4yA 214 0.000150 c.37.1.1,g.41.2.1 31901,45181 1uj2A 252 0.000211 c.37.1.6 99452 1gky 187 0.000287 1zd8A 227 0.000363 2an9A 207 0.000371 c.37.1.1 127037 2f6rA 281 0.000380 1kdoA 227 0.000423 c.37.1.1 68478 1nksA 194 0.000680 c.37.1.1 31886 3crrA 323 0.000735 3c8uA 208 0.001327 1e6cA 173 0.001679 c.37.1.2 59296 2eu8A 216 0.002155 2g1kA 176 0.002619 c.37.1.2 134519 2ax4A 198 0.002746 1zin 217 0.002820 2ak3A 226 0.003127 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.003347 c.37.1.1,g.41.2.1 31894,45195 1p3jA 217 0.003671 c.37.1.1,g.41.2.1 94022,94023 2rgxA 206 0.004053 2ze7A 253 0.004148 2iyvA 184 0.004324 c.37.1.2 137812 1nn5A 215 0.004578 c.37.1.1 85892 1n3bA 216 0.004745 c.37.1.1 79959 1khtA 192 0.005592 c.37.1.1 84401 1ltqA 301 0.006616 c.108.1.9,c.37.1.1 78208,78209 1jjvA 206 0.006813 c.37.1.1 71698 1s96A 219 0.008934 c.37.1.1 98740 1akyA 220 0.009057 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.009467 2qt1A 207 0.01080 2rhmA 193 0.01320 2bdtA 189 0.01465 c.37.1.25 128344 1viaA 175 0.01655 c.37.1.2 100754 1zinA 217 0.01656 c.37.1.1,g.41.2.1 31915,45178 1rkbA 173 0.02157 c.37.1.1 111854 1zuhA 168 0.02423 2p67A 341 0.02531 1ly1A 181 0.03954 c.37.1.1 74334 1m7gA 211 0.04311 c.37.1.4 78724 2f1rA 171 0.04900 2pezA 179 0.05435 2yvuA 186 0.05518 1xjcA 169 0.05955 c.37.1.10 115387 2orwA 184 0.06024 1kagA 173 0.08445 c.37.1.2 72249 1np6A 174 0.1402 c.37.1.10 85954 2ga8A 359 0.1615 1xx6A 191 0.2262 c.37.1.24,g.39.1.14 116139,116140 1esmA 316 0.2274 c.37.1.6 31953 2r44A 331 0.2689 2pt5A 168 0.2783 2eyuA 261 0.2969 1sq5A 308 0.3229 c.37.1.6 105882 1e9rA 437 0.3938 c.37.1.11 64827 1nlfA 279 0.6180 c.37.1.11 85850 1w44A 331 0.6347 c.37.1.11 114147 2og2A 359 0.6803 2cbzA 237 0.6926 1dekA 241 0.7253 c.37.1.1 31842 2d2eA 250 0.7524 2oap1 511 0.8027 1a7jA 290 0.8330 c.37.1.6 31952 2vhjA 331 0.8658 3b9qA 302 0.8751 2bbsA 290 0.9104 1nijA 318 0.9151 c.37.1.10,d.237.1.1 85741,85742 2hf9A 226 0.9859 1vplA 256 1.040 c.37.1.12 113966 1l2tA 235 1.057 c.37.1.12 73514 1g8fA 511 1.361 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1tq4A 413 1.412 c.37.1.8 107201 1njgA 250 1.470 c.37.1.20 85785 2p5tB 253 1.475 2pzeA 229 1.502 2ixeA 271 1.521 2grjA 192 1.577 2ff7A 247 1.588 c.37.1.12 133377 1zu4A 320 1.630 1a7j 290 1.681 1in4A 334 1.737 a.4.5.11,c.37.1.20 62597,62598 1xmiA 291 1.766 c.37.1.12 115489 1rz3A 201 1.879 c.37.1.6 98132 1gvnB 287 1.974 c.37.1.21 76354 1vmaA 306 2.041 a.24.13.1,c.37.1.10 108887,108888 2qy9A 309 2.141 1pujA 282 2.165 c.37.1.8 88294 1g6hA 257 2.193 c.37.1.12 60318 1sxjC 340 2.239 a.80.1.1,c.37.1.20 106085,106086 2pmkA 243 2.240 1g8yA 279 2.330 c.37.1.11 32302 1r0wA 286 2.371 c.37.1.12 96754 2k3aA 155 2.421 1x6vA 630 2.551 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1z47A 355 3.021 1j8mF 297 3.091 a.24.13.1,c.37.1.10 62742,62743 1sxjA 511 3.128 a.80.1.1,c.37.1.20 106081,106082 1n2zA 245 3.186 c.92.2.2 79865 1ls1A 295 3.319 a.24.13.1,c.37.1.10 78170,78171 1ihuA 589 3.343 c.37.1.10,c.37.1.10 62394,62395 1b0uA 262 3.350 c.37.1.12 32370 1ji0A 240 3.353 c.37.1.12 71665 1n4aA 252 3.447 c.92.2.2 85317 1knxA 312 3.591 c.98.2.1,c.91.1.2 77459,77460 1nsf 273 3.629 2gzaA 361 3.667 1w9iA 770 3.674 1ye8A 178 3.867 c.37.1.11 123010 1tq6A 413 4.210 c.37.1.8 107202 2pcjA 224 4.227 2qi9C 249 4.292 1xbtA 193 4.310 c.37.1.24,g.39.1.14 115080,115081 1d0yA 761 4.351 b.34.3.1,c.37.1.9 24581,32178 2fh5B 214 4.417 c.37.1.8 133478 1a5t 334 4.432 2it1A 362 4.772 2r2aA 199 4.898 2bkhA 814 4.938 2v26A 784 4.969 1lvk 762 5.131 1tueA 212 5.149 c.37.1.20 107323 2ihyA 279 5.481 1w7jA 795 5.579 b.34.3.1,c.37.1.9 120688,120689 2px0A 296 5.620 1svmA 377 5.978 c.37.1.20 112126 2akaA 776 6.637 2pt7A 330 6.798 2jrnA 163 6.803 1in6A 334 7.276 a.4.5.11,c.37.1.20 62601,62602 1rj9A 304 7.691 a.24.13.1,c.37.1.10 97553,97554 1oxsC 353 7.942 b.40.6.3,c.37.1.12 87519,87520 1g6oA 330 8.403 c.37.1.11 32430 2c9oA 456 8.728 1htwA 158 8.876 c.37.1.18 71083 1sxjE 354 9.030 a.80.1.1,c.37.1.20 106089,106090 1us8A 147 9.260 c.37.1.12 99859 1gl6A 436 9.274 c.37.1.11 70259 1a5tA 334 9.518 a.80.1.1,c.37.1.20 18450,32423 1j8yF 297 9.815 a.24.13.1,c.37.1.10 62747,62748 1t9hA 307 9.843 b.40.4.5,c.37.1.8 112358,112359 1bifA 469 10.01 c.37.1.7,c.60.1.4 31961,34003 1sgwA 214 10.12 c.37.1.12 105541 2chgA 226 10.87 1oxxK 353 10.92 b.40.6.3,c.37.1.12 93715,93716 1w5tA 412 10.96 a.4.5.11,c.37.1.20 114255,114256 1mvwA 840 11.28 i.15.1.1 79523 1mkyA 439 11.64 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2qm8A 337 11.84 1xwiA 322 11.87 3b9pA 297 12.65 2akaB 299 13.43 c.37.1.8 126914 2r6fA 972 13.59 1f2tA 149 13.82 c.37.1.12 32373 1d2nA 272 14.15 c.37.1.20 32428 1ewqA 765 15.10 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1n25A 368 15.13 c.37.1.20 85264 1yrbA 262 15.25 c.37.1.10 123915 2z83A 459 15.74 2dr3A 247 17.03 2pjzA 263 17.64 3cox 507 17.77 3bosA 242 18.03 1lv7A 257 18.46 c.37.1.20 78232 1g55A 343 18.96 c.66.1.26 34247 1ycdA 243 19.37 2nq2C 253 19.46 1d6jA 211 20.06 c.37.1.4 31940 2hhjA 267 20.20 c.60.1.1 136497 1lw7A 365 21.26 c.26.1.3,c.37.1.1 74295,74296 1cp2A 269 22.29 c.37.1.10 32269 1xewX 182 23.42 c.37.1.12 115235 2gxaA 274 25.14 1efdN 266 25.86 c.92.2.1 35597 1qhlA 227 26.13 c.37.1.12 32382 2yv5A 302 26.57 2iutA 574 26.68 1ko7A 314 26.78 c.98.2.1,c.91.1.2 72797,72798 1g3qA 237 26.88 c.37.1.10 60237 7a3hA 303 26.90 c.1.8.3 28817 2a5yB 549 27.13 1f6bA 198 28.15 c.37.1.8 64986 1b5tA 275 28.31 c.1.23.1 29676 1yqtA 538 28.88 1u0jA 267 32.54 c.37.1.20 107546 1tca 317 34.92 1jbkA 195 35.11 c.37.1.20 71631 1mwmA 320 35.21 c.55.1.1,c.55.1.1 79580,79581 2gdjA 264 35.27 c.37.1.11 135018 3bh0A 315 35.45 1qopA 268 35.72 c.1.2.4 28570 2cvhA 220 37.54 2g6bA 180 38.03 c.37.1.8 134701 1ny6A 267 38.92 c.37.1.20 92321 2qm0A 275 39.75 2b8wA 328 40.57 2h17A 181 40.72 2h57A 190 44.52 1fj2A 232 45.54 c.69.1.14 34720 1h65A 270 47.66 c.37.1.8 65640 1wcv1 257 47.97 3bs4A 260 48.74 1wywA 230 50.20 2chuA 296 51.57 c.92.2.4 130485 2rebA 352 52.19 c.37.1.11,d.48.1.1 32282,38767 2phzA 311 52.59 1jx2B 315 54.60 c.37.1.8 67404 1bif 469 57.45 1w36D 608 58.18 c.37.1.19,c.37.1.19 114128,114129 1pfkA 320 58.51 c.89.1.1 35575 1srvA 145 60.68 c.8.5.1 30817 1g291 372 62.92 5nul 138 65.94 1o51A 114 69.75 d.58.5.4 92480 2fdxA 138 70.98 c.23.5.1 31192 1odfA 290 73.55 c.37.1.6 92782 1fnnA 389 74.17 a.4.5.11,c.37.1.20 16129,32426 2r7aA 256 76.30 2f7lA 455 78.57 2qgzA 308 79.35 2oblA 347 80.25 2uvkA 357 82.02 2dkaA 544 82.26 2fnaA 357 85.56 a.4.5.11,c.37.1.20 133809,133810 1vcoA 550 85.57 c.23.16.1,c.37.1.10 108508,108509 1kid 203 87.01 2jdiD 482 87.09 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1eg7A 557 89.22 c.37.1.10 32241