# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 4.31e-07 1znwA 207 9.81e-07 c.37.1.1 125412 2j41A 207 1.18e-06 1z6gA 218 1.48e-06 2ccjA 205 1.69e-06 1p5zB 263 3.86e-06 c.37.1.1 87815 2pbrA 195 4.59e-06 4tmkA 213 6.10e-06 c.37.1.1 31930 1z8fA 228 9.45e-06 1kjwA 295 1.03e-05 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 3.15e-05 1ukzA 203 3.98e-05 c.37.1.1 31840 1gtvA 214 4.70e-05 c.37.1.1 70537 1t3lA 337 9.62e-05 b.34.2.1,c.37.1.1 106358,106359 1t0hB 224 0.000270 c.37.1.1 106208 2bwjA 199 0.000275 2z0hA 197 0.000313 1ex7A 186 0.000512 c.37.1.1 59537 2c95A 196 0.000801 1s4qA 228 0.000888 c.37.1.1 98507 1ukz 203 0.000915 2axpA 173 0.000985 c.37.1.1 127497 1p6xA 334 0.001169 c.37.1.1 94195 2cdnA 201 0.001711 c.37.1.1 130289 1e2kA 331 0.001751 c.37.1.1 31854 1qhiA 366 0.001760 c.37.1.1 31860 1qhxA 178 0.002099 c.37.1.3 31936 1knqA 175 0.002244 c.37.1.17 72786 1y63A 184 0.003044 c.37.1.1 116494 2f6rA 281 0.003625 1ki9A 192 0.004422 c.37.1.1 84404 1of1A 376 0.004523 c.37.1.1 103924 2vp4A 230 0.005620 1oe0A 230 0.006101 c.37.1.1 92788 1zm7A 230 0.006693 1xrjA 261 0.006878 c.37.1.6 122256 3tmkA 216 0.007779 c.37.1.1 31920 1uj2A 252 0.009499 c.37.1.6 99452 2qgnA 322 0.01114 2ax4A 198 0.01196 1qf9A 194 0.01201 c.37.1.1 31848 2an9A 207 0.01553 c.37.1.1 127037 1e4yA 214 0.01665 c.37.1.1,g.41.2.1 31901,45181 1ckeA 227 0.02005 c.37.1.1 31846 2bdtA 189 0.02197 c.37.1.25 128344 1kgdA 180 0.02284 c.37.1.1 68582 2rhmA 193 0.02832 3crrA 323 0.03029 1gky 187 0.03374 1m7gA 211 0.03528 c.37.1.4 78724 3c8uA 208 0.03625 1e6cA 173 0.03949 c.37.1.2 59296 1vhtA 218 0.04017 c.37.1.1 100700 1nksA 194 0.04099 c.37.1.1 31886 2eu8A 216 0.05174 1kdoA 227 0.05358 c.37.1.1 68478 2iyvA 184 0.05796 c.37.1.2 137812 1n3bA 216 0.07648 c.37.1.1 79959 2yvuA 186 0.07836 2pezA 179 0.07946 2rgxA 206 0.08018 1p3jA 217 0.08481 c.37.1.1,g.41.2.1 94022,94023 1akyA 220 0.1009 c.37.1.1,g.41.2.1 31896,45197 1zinA 217 0.1180 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.1338 c.37.1.2 134519 2pt5A 168 0.1581 3be4A 217 0.1650 1zin 217 0.1662 1s96A 219 0.1813 c.37.1.1 98740 1ak2A 233 0.2018 c.37.1.1,g.41.2.1 31894,45195 1viaA 175 0.2148 c.37.1.2 100754 1nn5A 215 0.2249 c.37.1.1 85892 1rkbA 173 0.2545 c.37.1.1 111854 1khtA 192 0.2784 c.37.1.1 84401 1zd8A 227 0.2970 1jjvA 206 0.4106 c.37.1.1 71698 1kagA 173 0.4455 c.37.1.2 72249 2ak3A 226 0.4513 c.37.1.1,g.41.2.1 31892,45193 2qt1A 207 0.5577 1ltqA 301 1.075 c.108.1.9,c.37.1.1 78208,78209 1a7jA 290 1.233 c.37.1.6 31952 1zuhA 168 1.431 1a7j 290 1.656 1esmA 316 2.113 c.37.1.6 31953 1ly1A 181 2.498 c.37.1.1 74334 1gvnB 287 2.614 c.37.1.21 76354 2p5tB 253 2.696 2orwA 184 2.989 1r0wA 286 3.260 c.37.1.12 96754 1nijA 318 3.370 c.37.1.10,d.237.1.1 85741,85742 1z47A 355 3.415 2px0A 296 3.574 1sq5A 308 3.732 c.37.1.6 105882 2eyuA 261 4.063 2ga8A 359 4.131 2ze7A 253 4.133 1xmiA 291 4.546 c.37.1.12 115489 1vmaA 306 4.885 a.24.13.1,c.37.1.10 108887,108888 1xx6A 191 4.934 c.37.1.24,g.39.1.14 116139,116140 2bbsA 290 5.116 2qy9A 309 5.771 2cbzA 237 6.315 2p67A 341 6.668 2it1A 362 7.952 2og2A 359 8.584 1ji0A 240 8.610 c.37.1.12 71665 1lw7A 365 9.113 c.26.1.3,c.37.1.1 74295,74296 2hf9A 226 9.98 2gzaA 361 10.08 1vplA 256 10.14 c.37.1.12 113966 1tq6A 413 10.60 c.37.1.8 107202 2grjA 192 10.85 1tq4A 413 10.90 c.37.1.8 107201 2qu8A 228 11.15 1nsf 273 11.33 3b9qA 302 12.60 2yvaA 196 12.97 2d2eA 250 13.02 1zu4A 320 13.16 1htwA 158 13.25 c.37.1.18 71083 1w44A 331 13.73 c.37.1.11 114147 1g6oA 330 13.83 c.37.1.11 32430 1j8mF 297 14.51 a.24.13.1,c.37.1.10 62742,62743 2pt7A 330 15.08 1rz3A 201 15.27 c.37.1.6 98132 1t9hA 307 15.76 b.40.4.5,c.37.1.8 112358,112359 1dekA 241 15.78 c.37.1.1 31842 1g8fA 511 16.34 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1g6hA 257 17.12 c.37.1.12 60318 2vhjA 331 17.67 2pzeA 229 17.83 2fh5B 214 18.26 c.37.1.8 133478 1ls1A 295 18.37 a.24.13.1,c.37.1.10 78170,78171 2qi9C 249 18.88 2ff7A 247 18.93 c.37.1.12 133377 1rj9A 304 21.48 a.24.13.1,c.37.1.10 97553,97554 2ihyA 279 21.99 1sxjC 340 22.00 a.80.1.1,c.37.1.20 106085,106086 1sxjA 511 22.04 a.80.1.1,c.37.1.20 106081,106082 1oxsC 353 22.78 b.40.6.3,c.37.1.12 87519,87520 1lnzA 342 22.92 b.117.1.1,c.37.1.8 78112,78113 2ixeA 271 23.36 1j8yF 297 24.13 a.24.13.1,c.37.1.10 62747,62748 1mkyA 439 24.37 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1in4A 334 25.09 a.4.5.11,c.37.1.20 62597,62598 1e9rA 437 25.40 c.37.1.11 64827 1oxxK 353 25.54 b.40.6.3,c.37.1.12 93715,93716 2i2wA 212 25.65 1a5t 334 25.66 1mwmA 320 26.42 c.55.1.1,c.55.1.1 79580,79581 1xjcA 169 26.94 c.37.1.10 115387 2pjzA 263 28.05 1l2tA 235 28.63 c.37.1.12 73514 1in6A 334 28.71 a.4.5.11,c.37.1.20 62601,62602 2reb 352 28.96 2yv5A 302 29.13 1b0uA 262 29.22 c.37.1.12 32370 2chgA 226 29.37 1bifA 469 29.59 c.37.1.7,c.60.1.4 31961,34003 1w5tA 412 29.78 a.4.5.11,c.37.1.20 114255,114256 2qm0A 275 33.72 2pmkA 243 34.51 1x6vA 630 34.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1h65A 270 36.18 c.37.1.8 65640 1nlfA 279 36.56 c.37.1.11 85850 1yqtA 538 37.45 1fj2A 232 38.81 c.69.1.14 34720 1xwiA 322 40.09 2pcjA 224 41.18 1pujA 282 41.26 c.37.1.8 88294 1yrbA 262 41.98 c.37.1.10 123915 2nq2C 253 42.72 1ihuA 589 43.98 c.37.1.10,c.37.1.10 62394,62395 1vptA 348 44.34 c.66.1.25 34207 1g8yA 279 44.44 c.37.1.11 32302 1sgwA 214 44.72 c.37.1.12 105541 3cox 507 44.74 1v39 322 50.04 1f6bA 198 50.71 c.37.1.8 64986 1xbtA 193 51.57 c.37.1.24,g.39.1.14 115080,115081 1r1dA 247 51.78 c.69.1.29 96813 1zi8A 236 52.22 1sviA 195 52.51 c.37.1.8 106048 1nf3A 195 52.89 c.37.1.8 85594 2gdjA 264 55.46 c.37.1.11 135018 2f1rA 171 57.45 3b9pA 297 57.53 2jrnA 163 57.62 1ye8A 178 58.16 c.37.1.11 123010 1jx2B 315 58.80 c.37.1.8 67404 1vpt 348 58.95 3bh0A 315 59.15 7a3hA 303 59.50 c.1.8.3 28817 1knxA 312 59.62 c.98.2.1,c.91.1.2 77459,77460 2akaA 776 59.73 1odfA 290 61.36 c.37.1.6 92782 2k3aA 155 62.24 1r88A 280 62.65 c.69.1.3 97219 2r44A 331 63.95 2hxsA 178 64.72 2bkhA 814 66.08 1ny6A 267 66.64 c.37.1.20 92321 1ycdA 243 67.15 1b6g 310 68.31 2c9oA 456 69.26 3mag 307 70.09 2rexB 197 70.20 2pc8A 400 71.05 2fnaA 357 71.71 a.4.5.11,c.37.1.20 133809,133810 3bdvA 191 72.84 1fnnA 389 73.25 a.4.5.11,c.37.1.20 16129,32426 1x92A 199 74.97 c.80.1.3 114976 1d0yA 761 77.43 b.34.3.1,c.37.1.9 24581,32178 2h57A 190 78.81 1np6A 174 79.63 c.37.1.10 85954 1tca 317 80.57 1b5tA 275 80.61 c.1.23.1 29676 2a5jA 191 81.52 c.37.1.8 126175 1egaA 301 87.06 c.37.1.8,d.52.3.1 32150,38836 3bosA 242 87.44 1cr1A 296 87.46 c.37.1.11 32286 2p65A 187 87.67