Best Alignments for T0419

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2plrA/T0419-2plrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2plrA/T0419-2plrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1868e-042.06e-25
2yvuA/T0419-2yvuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yvuA/T0419-2yvuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1951e-032.41e-22
2ccjA/T0419-2ccjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ccjA/T0419-2ccjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5436e-033.31e-30
2pbrA/T0419-2pbrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pbrA/T0419-2pbrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3500e-039.18e-21
1gvnB/T0419-1gvnB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gvnB/T0419-1gvnB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7325e-032.55e-29 c.37.1.21
2z0hA/T0419-2z0hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2z0hA/T0419-2z0hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4134e-023.73e-15
4tmkA/T0419-4tmkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 4tmkA/T0419-4tmkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7596e-023.61e-21 5tmpA c.37.1.1
2qorA/T0419-2qorA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qorA/T0419-2qorA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2384e-026.81e-22
2rhmA/T0419-2rhmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rhmA/T0419-2rhmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8853e-022.19e-17
1ak2A/T0419-1ak2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ak2A/T0419-1ak2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3135e-029.76e-19 c.37.1.1
g.41.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001