# List of top-scoring protein chains for T0419.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2j289 430 1.19e-01 2yvuA 186 1.38e-01 2z0hA 197 2.38e-01 2pbrA 195 3.49e-01 2iyoA 472 3.59e-01 2iypA 473 3.60e-01 2iz1A 474 3.61e-01 2qorA 204 4.25e-01 2plrA 213 5.19e-01 1z6gA 218 5.23e-01 1ftsA 295 6.53e-01 a.24.13.1,c.37.1.10 16968,32279 2qy9A 309 6.99e-01 1qzxA 440 8.21e-01 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 1e9fA 217 8.47e-01 c.37.1.1 64811 1uj2A 252 9.44e-01 c.37.1.6 99452 1xrjA 261 1.00e+00 c.37.1.6 122256 3b9qA 302 1.80e+00 3bb1A 274 1.84e+00 1h65A 270 1.85e+00 c.37.1.8 65640 2og2A 359 2.07e+00 1fzqA 181 2.24e+00 1hurA c.37.1.8 32060 3bioA 304 2.38e+00 1ye8A 178 2.84e+00 c.37.1.11 123010 1gvnB 287 3.19e+00 c.37.1.21 76354 1vmaA 306 3.30e+00 a.24.13.1,c.37.1.10 108887,108888 1s9iA 354 3.62e+00 d.144.1.7 112047 2j5bA 348 4.25e+00 2v3cC 432 4.26e+00 1m1zA 513 4.37e+00 c.26.2.1,d.153.1.1 78457,78458 2p90A 319 4.46e+00 2hnaA 147 4.73e+00 1z8fA 228 4.76e+00 1mtoA 319 5.00e+00 c.89.1.1 79458 2f1rA 171 5.15e+00 1znwA 207 5.41e+00 c.37.1.1 125412 1e9eA 215 5.62e+00 c.37.1.1 64810 1s4qA 228 5.72e+00 c.37.1.1 98507 3tmkA 216 5.77e+00 3tmkA c.37.1.1 31920 1nn5A 215 5.98e+00 c.37.1.1 85892 2bifA 469 6.10e+00 1bif c.37.1.7,c.60.1.4 31963,34009 1bifA 469 6.12e+00 c.37.1.7,c.60.1.4 31961,34003 3bifA 468 6.14e+00 1bif c.37.1.7,c.60.1.4 31962,34008 1e98A 215 6.49e+00 c.37.1.1 64804 2pjzA 263 6.91e+00 1j8mF 297 7.09e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1j8yF 297 7.16e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1gtvA 214 7.42e+00 c.37.1.1 70537 2odpA 509 7.88e+00 2i6qA 517 8.00e+00 1ukzA 203 8.13e+00 c.37.1.1 31840 1mr3F 181 8.33e+00 c.37.1.8 79422 2j41A 207 8.46e+00 2p55A 333 8.46e+00 2r44A 331 8.62e+00 1s3gA 217 8.63e+00 c.37.1.1,g.41.2.1 98433,98434 1s9jA 341 8.75e+00 d.144.1.7 112049 1fduA 327 8.91e+00 1fds c.2.1.2 29848 1a27A 289 9.06e+00 c.2.1.2 29839 1fdsA 327 9.33e+00 c.2.1.2 29838 1jtvA 327 9.40e+00 c.2.1.2 84230 1nksA 194 1.03e+01 1nksA c.37.1.1 31886 1fdwA 327 1.04e+01 c.2.1.2 29845 4pfkA 319 1.06e+01 c.89.1.1 35582 2p5tB 253 1.08e+01 6pfkA 319 1.11e+01 3pfk c.89.1.1 35583 1nmyA 209 1.11e+01 c.37.1.1 85883 2ga8A 359 1.13e+01 2q3fA 181 1.14e+01 2h57A 190 1.16e+01 1lkxA 697 1.16e+01 c.37.1.9 73981 1yrbA 262 1.19e+01 c.37.1.10 123915 1mv5A 243 1.21e+01 c.37.1.12 91469 1im5A 180 1.22e+01 c.33.1.3 66211 2yz2A 266 1.23e+01 1r6bX 758 1.24e+01 a.174.1.1,c.37.1.20,c.37.1.20 104818,104819,104820 2pzgA 241 1.27e+01 3bh6A 164 1.27e+01 1kdoA 227 1.28e+01 c.37.1.1 68478 3bh7A 164 1.37e+01 2d4aA 308 1.37e+01 1vl6A 388 1.40e+01 c.2.1.7,c.58.1.3 108724,108725 2haeA 386 1.41e+01 c.2.1.7,c.58.1.3 136278,136279 4tmkA 213 1.44e+01 5tmpA c.37.1.1 31930 1tevA 196 1.47e+01 c.37.1.1 106817 2pzeA 229 1.49e+01 1eq6A 189 1.49e+01 1eq6A d.107.1.1 40796 2femA 227 1.49e+01 1ltkA 425 1.50e+01 c.86.1.1 84698 1ex7A 186 1.59e+01 1gky c.37.1.1 59537 2pgdA 482 1.62e+01 a.100.1.1,c.2.1.6 18778,30190 2ofwA 208 1.62e+01 1jhsA 188 1.63e+01 d.107.1.1 84172 1ckeA 227 1.63e+01 1ckeA c.37.1.1 31846 1o9zA 177 1.65e+01 b.2.3.5 86717 2bscA 177 1.70e+01 b.2.3.5 129080 2dq4A 343 1.84e+01 2ofxA 207 1.97e+01 1xfjA 261 2.05e+01 d.194.1.2 109585 1vptA 348 2.12e+01 c.66.1.25 34207 2bboA 291 2.17e+01 1wikA 109 2.18e+01 c.47.1.1 114675 1lv7A 257 2.28e+01 c.37.1.20 78232 3bb3A 262 2.30e+01 1xtkA 390 2.32e+01 c.37.1.19,c.37.1.19 116026,116027 2j3eA 249 2.41e+01 2p4qA 497 2.51e+01 1oxsC 353 2.53e+01 b.40.6.3,c.37.1.12 87519,87520 3bb4A 262 2.54e+01 1oxxK 353 2.55e+01 b.40.6.3,c.37.1.12 93715,93716 1xtjA 386 2.69e+01 c.37.1.19,c.37.1.19 116024,116025 1xtiA 391 2.72e+01 c.37.1.19,c.37.1.19 116022,116023 2ax4A 198 2.79e+01 1uteA 313 2.82e+01 1uteA d.159.1.1 42078 1t6dA 315 2.82e+01 c.55.1.8,c.55.1.8 106560,106561 1iolA 327 2.88e+01 c.2.1.2 29842 1v39A 322 2.97e+01 c.66.1.25 34206 2pezA 179 2.98e+01 1vp3A 348 3.03e+01 c.66.1.25 34209 1kkoA 413 3.12e+01 c.1.11.2,d.54.1.1 68675,68676 1nijA 318 3.20e+01 c.37.1.10,d.237.1.1 85741,85742 2cdqA 510 3.22e+01 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 3adkA 194 3.38e+01 c.37.1.1 31885 1qhxA 178 3.42e+01 1qhsA c.37.1.3 31936 1eovA 487 3.66e+01 1b8aA b.40.4.1,d.104.1.1 25239,40760 1asyA 490 3.66e+01 1b8aA b.40.4.1,d.104.1.1 25242,40763 2jeoA 245 3.71e+01 2qgaB 465 3.72e+01 2hvgA 482 3.76e+01 2vglS 142 3.77e+01 1li4A 432 3.79e+01 c.2.1.4,c.23.12.3 84616,84617 1a7aA 432 3.79e+01 1b3rA c.2.1.4,c.23.12.3 30104,31364 1t6cA 315 3.88e+01 c.55.1.8,c.55.1.8 106558,106559 1b3rA 431 3.94e+01 1b3rA c.2.1.4,c.23.12.3 30106,31366 2chgA 226 4.02e+01 1ry2A 663 4.04e+01 e.23.1.1 98083 1l0wA 580 4.05e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1zk5A 176 4.11e+01 3bk7A 607 4.13e+01 2cdnA 201 4.18e+01 c.37.1.1 130289 2j4rA 308 4.19e+01 2pzfA 228 4.19e+01 1xwfA 431 4.21e+01 c.2.1.4,c.23.12.3 122392,122393 1oioA 178 4.21e+01 b.2.3.5 93069 2e6kA 651 4.29e+01 1vmeA 410 4.35e+01 c.23.5.1,d.157.1.3 108893,108894 2bs8A 176 4.36e+01 2bsbA 176 4.37e+01 2ix8A 976 4.37e+01 2iw3A 986 4.40e+01 2aaxA 275 4.41e+01 2pk0A 250 4.48e+01 1d02A 202 4.52e+01 1d02A c.52.1.8 33313 2jg5A 306 4.56e+01 1o7dA 298 4.56e+01 c.6.2.1 86641 1ny6A 267 4.63e+01 c.37.1.20 92321 1qcrF 103 4.86e+01 1be3F f.27.1.1 43676 1d4fA 431 4.87e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 2rhmA 193 4.94e+01 2qm8A 337 4.96e+01 1z9hA 290 5.04e+01 a.45.1.1,c.47.1.5 124758,124759 1zd9A 188 5.07e+01 c.37.1.8 124938 1ppjF 110 5.12e+01 f.27.1.1 104262 1g7eA 122 5.13e+01 1g7eA c.47.1.7 33055 2bwjA 199 5.14e+01 1uf9A 203 5.22e+01 c.37.1.1 99326 1zb1A 392 5.23e+01 2bukA 196 5.26e+01 b.121.7.1 129220 2da1A 70 5.26e+01 1sqpF 110 5.28e+01 1xmiA 291 5.37e+01 c.37.1.12 115489 2qtsA 438 5.41e+01 1wzmA 585 5.42e+01 b.1.18.2,b.71.1.1,c.1.8.1 121519,121520,121521 2r47A 157 5.42e+01 1lk3A 160 5.52e+01 a.26.1.3 73950 1x6vA 630 5.70e+01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qs7A 144 5.82e+01 3c8uA 208 5.83e+01 2eyuA 261 5.85e+01 2aa2A 275 5.90e+01 1qrcA 559 5.92e+01 1tyv b.80.1.6 28045 2bs71 176 6.01e+01 1g4uR 184 6.04e+01 1ctqA c.37.1.8 32005 1hh4A 192 6.05e+01 c.37.1.8 61037 1mh1A 186 6.07e+01 c.37.1.8 32002 2a3iA 253 6.08e+01 2zkiA 199 6.11e+01 2qhpA 296 6.13e+01 1xmjA 290 6.19e+01 c.37.1.12 115494 2d7uA 339 6.22e+01 1fw8A 415 6.24e+01 16pk c.86.1.1 60058 2c1lA 358 6.25e+01 2gpfA 72 6.26e+01 1cydA 244 6.26e+01 1cydA c.2.1.2 29825 2ixfA 271 6.30e+01 2ixgA 271 6.31e+01 1odfA 290 6.34e+01 c.37.1.6 92782 1a6qA 382 6.36e+01 a.159.1.1,d.219.1.1 75801,75802 2ixeA 271 6.36e+01 2pstX 74 6.37e+01 1qpgA 415 6.41e+01 c.86.1.1 35450 2gzaA 361 6.44e+01 1aozA 552 6.46e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2d8nA 207 6.46e+01 2f02A 323 6.49e+01 c.72.1.1 132649 1jf6A 585 6.50e+01 b.1.18.2,b.71.1.1,c.1.8.1 71650,71651,71652 2qulA 290 6.63e+01 1ofhA 310 6.64e+01 c.37.1.20 86948 1l1eA 287 6.70e+01 c.66.1.18 73454 1e96A 192 6.71e+01 1ctqA c.37.1.8 32007 1i4tD 192 6.77e+01 c.37.1.8 61731 1ixzA 254 6.87e+01 c.37.1.20 76938 1ji2A 585 6.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1zd8A 227 6.90e+01 2chqA 319 7.01e+01 1qq1A 559 7.03e+01 1tyv b.80.1.6 28041 1w8jA 766 7.11e+01 1iy2A 278 7.17e+01 c.37.1.20 76941 1tspA 559 7.17e+01 b.80.1.6 28044 2p2lA 188 7.18e+01 c.37.1.8 139465 1w7jA 795 7.21e+01 b.34.3.1,c.37.1.9 120688,120689 2h18A 193 7.29e+01 2nq2C 253 7.33e+01 2ak3A 226 7.33e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1qa2A 554 7.36e+01 1tyv b.80.1.6 28048 1qf9A 194 7.37e+01 1zin c.37.1.1 31848 1tyvA 554 7.38e+01 b.80.1.6 28038 2d2oA 585 7.40e+01 b.1.18.2,b.71.1.1,c.1.8.1 131176,131177,131178 2i71A 400 7.44e+01 1mozA 183 7.51e+01 c.37.1.8 79368 2bq8X 304 7.59e+01 1jf5A 585 7.62e+01 b.1.18.2,b.71.1.1,c.1.8.1 71644,71645,71646 1warA 310 7.65e+01 1m2oB 190 7.69e+01 c.37.1.8 78485 1he1C 176 7.71e+01 1ctqA c.37.1.8 32003 2nz8A 177 7.78e+01 c.37.1.8 138837 2fjuA 178 7.78e+01 c.37.1.8 133622 2gaoA 208 7.79e+01 c.37.1.8 134891 2al7A 186 7.82e+01 c.37.1.8 126972 1i4dD 192 7.89e+01 1ctqA c.37.1.8 61684 1y9rA 255 7.91e+01 2oaxA 256 7.93e+01 1qa3A 554 7.93e+01 1tyv b.80.1.6 28046 2osbA 216 7.99e+01