# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ukz 197 1.461e-05 1zin 2bwjA 197 1.580e-05 2c95A 196 4.566e-05 2z0hA 185 5.489e-05 2p5tB 245 6.231e-05 2plrA 213 7.288e-05 1ukzA 197 1.914e-04 c.37.1.1 31840 2pbrA 196 4.303e-04 3be4A 216 4.583e-04 2axpA 173 4.970e-04 c.37.1.1 127497 1qf9A 195 5.340e-04 1zin c.37.1.1 31848 1ak2A 221 7.628e-04 c.37.1.1 31894 g.41.2.1 45195 1akyA 219 1.079e-03 c.37.1.1 31896 g.41.2.1 45197 1kdoA 224 1.936e-03 c.37.1.1 68478 2ccjA 197 2.755e-03 2ak3A 227 3.442e-03 1zin c.37.1.1 31892 g.41.2.1 45193 1akeA 215 3.464e-03 1zin c.37.1.1 31905 g.41.2.1 45185 1nn5A 205 5.133e-03 c.37.1.1 85892 1e9eA 211 7.424e-03 c.37.1.1 64810 1p3jA 213 7.974e-03 c.37.1.1 94022 g.41.2.1 94023 1zinA 218 8.299e-03 c.37.1.1 31915 g.41.2.1 45178 2rgxA 204 8.751e-03 2eu8A 217 1.079e-02 1qhxA 179 2.324e-02 1qhsA c.37.1.3 31936 1zuhA 152 2.351e-02 1rkbA 174 2.695e-02 c.37.1.1 111854 1cznA 170 3.241e-02 1rcf c.23.5.1 31181 1rcf 170 3.923e-02 1rcf 4tmkA 211 4.064e-02 5tmpA c.37.1.1 31930 2iyvA 180 4.169e-02 c.37.1.2 137812 1y63A 169 4.386e-02 c.37.1.1 116494 2cdnA 187 4.406e-02 c.37.1.1 130289 1oboA 170 4.476e-02 c.23.5.1 86776 1ki9A 192 4.515e-02 c.37.1.1 84404 1ckeA 213 4.571e-02 1ckeA c.37.1.1 31846 1nksA 195 5.354e-02 1nksA c.37.1.1 31886 1uj2A 214 5.485e-02 c.37.1.6 99452 3tmkA 217 5.719e-02 3tmkA c.37.1.1 31920 2rhmA 183 5.784e-02 5nul 139 5.836e-02 5nul 1e6cA 171 5.983e-02 1shkA c.37.1.2 59296 1e4yA 215 6.480e-02 1zin c.37.1.1 31901 g.41.2.1 45181 1viaA 162 7.338e-02 c.37.1.2 100754 1gtvA 209 7.375e-02 c.37.1.1 70537 1kagA 159 8.205e-02 c.37.1.2 72249 1zd8A 213 8.743e-02 5tmpA 211 8.795e-02 5tmpA c.37.1.1 31931 1oe0A 199 9.502e-02 c.37.1.1 92788 1qhsA 179 9.609e-02 1qhsA c.37.1.3 31938 2g1kA 169 9.747e-02 c.37.1.2 134519 1p5zB 230 1.071e-01 c.37.1.1 87815 2bdtA 173 1.136e-01 c.37.1.25 128344 2vp4A 199 1.178e-01 1n3bA 177 1.309e-01 c.37.1.1 79959 1zm7A 198 1.357e-01 2fcr 174 1.498e-01 1rcf 1bouA 133 1.719e-01 1bouA a.88.1.1 18521 1shkA 159 2.911e-01 1shkA c.37.1.2 31932 1gvnB 273 3.022e-01 c.37.1.21 76354 1zin 218 3.979e-01 1zin 1gky 187 5.672e-01 1gky 1ex7A 187 5.677e-01 1gky c.37.1.1 59537 2chgA 224 8.453e-01 1rz3A 185 9.446e-01 c.37.1.6 98132 1ag9A 176 9.568e-01 1rcf c.23.5.1 31178 1jjvA 195 9.598e-01 c.37.1.1 71698 1jr3A 367 1.040e+00 a.80.1.1 63245 c.37.1.20 63246 1sq5A 303 1.083e+00 c.37.1.6 105882 1ly1A 153 1.111e+00 c.37.1.1 74334 1esmA 312 1.146e+00 1esmA c.37.1.6 31953 1khtA 191 1.165e+00 c.37.1.1 84401 2qt1A 190 1.230e+00 1t0hB 188 1.238e+00 c.37.1.1 106208 1zu4A 306 1.334e+00 1jpnA 297 1.385e+00 a.24.13.1 67039 c.37.1.10 67040 3c8uA 207 1.387e+00 1ls1A 290 1.453e+00 a.24.13.1 78170 c.37.1.10 78171 2yvuA 180 1.654e+00 1in4A 299 1.852e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 2csuA 436 1.995e+00 c.2.1.8 130781 c.23.4.1 130782 c.23.4.1 130783 1j9eA 148 2.159e+00 c.23.5.1 62756 1knqA 172 2.356e+00 c.37.1.17 72786 1ng1 295 2.447e+00 1ng1 2vqeR 74 2.486e+00 2uubR 74 2.705e+00 a.4.8.1 139949 1yobA 180 2.727e+00 c.23.5.1 123776 1rj9A 278 3.237e+00 a.24.13.1 97553 c.37.1.10 97554 2fcrA 174 3.392e+00 c.23.5.1 31151 1odfA 281 3.874e+00 c.37.1.6 92782 1g41A 335 4.132e+00 1do0A c.37.1.20 32450 1ltqA 299 4.227e+00 c.108.1.9 78208 c.37.1.1 78209 1j8mF 296 4.245e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 2pt5A 167 4.342e+00 2eyuA 248 4.469e+00 2j41A 168 4.604e+00 2v79A 116 4.612e+00 3cyjA 360 4.705e+00 2ax4A 199 4.797e+00 2og2A 303 4.804e+00 1in6A 301 4.924e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 2f6rA 231 5.489e+00 2qm8A 321 5.622e+00 1l7vC 232 5.706e+00 c.37.1.12 73674 1ofhA 310 5.709e+00 c.37.1.20 86948 2cujA 109 5.792e+00 a.4.1.18 130812 2iqiA 174 5.890e+00 2i6dA 252 6.193e+00 2zadA 345 6.261e+00 1mr3F 178 6.494e+00 c.37.1.8 79422 3b9qA 299 6.770e+00 1f4pA 148 7.189e+00 5nul c.23.5.1 59651 1vhtA 209 7.489e+00 c.37.1.1 100700 1sxjC 323 7.630e+00 a.80.1.1 106085 c.37.1.20 106086 2qorA 197 7.723e+00 1ji0A 241 7.833e+00 c.37.1.12 71665 1l2tA 231 7.889e+00 c.37.1.12 73514 2px0A 259 7.987e+00 1b0uA 259 7.993e+00 1b0uA c.37.1.12 32370 1xrjA 212 8.068e+00 c.37.1.6 122256 1ipaA 259 8.279e+00 c.116.1.1 71254 d.79.3.3 71255 1yrbA 260 8.543e+00 c.37.1.10 123915 1wdpA 494 8.659e+00 c.1.8.1 120907 1qzzA 341 9.220e+00 a.4.5.29 96719 c.66.1.12 96720 2qy9A 301 9.507e+00 1egaA 293 9.640e+00 1egaA c.37.1.8 32150 d.52.3.1 38836 2q0dA 326 9.843e+00 2qi9C 249 1.093e+01 1vplA 239 1.101e+01 c.37.1.12 113966 1hurA 181 1.144e+01 1hurA c.37.1.8 32052 2ff7A 244 1.154e+01 c.37.1.12 133377 1xr0A 23 1.183e+01 1b4vA 499 1.190e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1zkdA 358 1.193e+01 c.66.1.52 125184 1kkoA 412 1.232e+01 c.1.11.2 68675 d.54.1.1 68676 1np6A 159 1.237e+01 c.37.1.10 85954 2hts 89 1.250e+01 2hts 1mmsA 134 1.283e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 487dL 134 1.283e+01 1mmsA i.1.1.2 45839 1sxjE 318 1.291e+01 a.80.1.1 106089 c.37.1.20 106090 2eucA 109 1.321e+01 a.249.1.1 132382 2pcjA 224 1.322e+01 1p9rA 379 1.361e+01 c.37.1.11 94399 1m7gA 209 1.411e+01 c.37.1.4 78724 1fl9A 158 1.424e+01 c.37.1.18 70137 1f0xA 503 1.436e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1jj7A 252 1.437e+01 c.37.1.12 63114 1x7oA 268 1.445e+01 1ev7A 296 1.470e+01 1ev7B c.52.1.9 33315 1v3hA 492 1.504e+01 c.1.8.1 108303 1b1yA 501 1.506e+01 1byb c.1.8.1 28796 1z6gA 192 1.559e+01 1htwA 159 1.561e+01 c.37.1.18 71083 2oznA 134 1.577e+01 1rgqC 23 1.587e+01 2oc0B 23 1.587e+01 2d13A 216 1.589e+01 c.26.2.1 131121 3brsA 272 1.684e+01 2rkhA 165 1.689e+01 1ny6A 248 1.692e+01 c.37.1.20 92321 1oxsC 353 1.761e+01 b.40.6.3 87519 c.37.1.12 87520 1oxxK 353 1.767e+01 b.40.6.3 93715 c.37.1.12 93716 1gouA 110 1.805e+01 d.1.1.2 65429 1h65A 258 1.830e+01 c.37.1.8 65640 1vmaA 295 1.834e+01 a.24.13.1 108887 c.37.1.10 108888 1othA 322 1.850e+01 1othA c.78.1.1 35260 c.78.1.1 35261 2d2eA 240 1.866e+01 2f1fA 164 1.874e+01 d.58.18.6 132760 d.58.18.6 132761 1jetA 518 1.893e+01 1jevA c.94.1.1 35718 1rnbA 110 1.943e+01 1b20A d.1.1.2 36196 1sgwA 201 1.948e+01 c.37.1.12 105541 2gsoA 383 1.980e+01 1et7A 340 2.001e+01 1nif b.6.1.3 23070 b.6.1.3 23071 2grjA 180 2.011e+01 2oz8A 372 2.038e+01 1aogA 486 2.052e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 3htsB 83 2.079e+01 2hts a.4.5.22 16175 1g6hA 255 2.083e+01 1gajA c.37.1.12 60318 3co5A 135 2.090e+01 1lv7A 252 2.100e+01 c.37.1.20 78232 1gajA 254 2.137e+01 1gajA c.37.1.12 60416 1uiiA 62 2.138e+01 h.1.28.1 107864 3c6qA 306 2.147e+01 2eshA 115 2.197e+01 a.4.5.61 132325 1m4jA 134 2.212e+01 d.109.1.2 78602 1bxeA 111 2.221e+01 1bxeA d.55.1.1 38898 1iqpA 327 2.221e+01 a.80.1.1 62649 c.37.1.20 62650 2cbzA 231 2.266e+01 1a2pA 109 2.276e+01 1b20A d.1.1.2 36140 2p7iA 226 2.284e+01 2f2eA 143 2.297e+01 a.4.5.69 132808 2nq2C 252 2.312e+01 1kgdA 176 2.334e+01 c.37.1.1 68582 3bjsA 371 2.371e+01 1uzeA 575 2.427e+01 d.92.1.5 108174 1yb2A 231 2.439e+01 c.66.1.13 122868 1d2nA 247 2.447e+01 1d2nA c.37.1.20 32428 1um8A 328 2.449e+01 c.37.1.20 99580 1kshA 166 2.462e+01 c.37.1.8 72914 1byb 491 2.527e+01 1byb 1mkyA 408 2.547e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1eyrA 226 2.578e+01 1eyrA c.68.1.13 34514 1r4aA 166 2.591e+01 c.37.1.8 96986 1xwiA 323 2.603e+01 1b20A 110 2.604e+01 1b20A d.1.1.2 36207 1zndA 158 2.683e+01 b.60.1.1 125380 1xm9A 421 2.694e+01 a.118.1.24 122142 1bllE 482 2.704e+01 1lam c.56.5.3 33833 c.50.1.1 33170 2pzeA 227 2.726e+01 1jy1A 440 2.737e+01 d.136.1.3 67438 d.136.1.3 67439 1x9mA 676 2.753e+01 c.55.3.5 114999 e.8.1.1 115000 1z8fA 185 2.756e+01 2pgeA 357 2.789e+01 2an9A 206 2.794e+01 c.37.1.1 127037 1xmiA 268 2.842e+01 c.37.1.12 115489 1js1X 325 2.859e+01 c.78.1.1 71834 c.78.1.1 71835 1zr9A 68 2.903e+01 g.37.1.1 125529 1njgA 241 2.907e+01 c.37.1.20 85785 2pceA 373 2.953e+01 2hneA 427 2.960e+01 1r8sA 161 2.961e+01 c.37.1.8 97247 2fswA 103 2.981e+01 a.4.5.69 134042 2oqhA 361 2.981e+01 1hqcA 315 2.993e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1f6bA 177 3.019e+01 c.37.1.8 64986 1zjrA 198 3.021e+01 5nulA 139 3.026e+01 c.23.5.1 31191 1o5zA 422 3.086e+01 c.59.1.2 92530 c.72.2.2 92531 1svsA 317 3.163e+01 c.37.1.8 106051 1h8vA 219 3.180e+01 2nlrA b.29.1.11 60795 1q9jA 389 3.200e+01 c.43.1.2 104590 c.43.1.2 104591 1r0wA 267 3.244e+01 c.37.1.12 96754 1jfuA 177 3.313e+01 c.47.1.10 62940 2nxwA 538 3.355e+01 2bbsA 254 3.405e+01 1e7uA 873 3.495e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1nv8A 272 3.518e+01 c.66.1.30 86224 2qvcA 303 3.548e+01 1b1cA 167 3.612e+01 1amoA c.23.5.2 31212 1cipA 317 3.662e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1as6A 336 3.669e+01 1nif b.6.1.3 23090 b.6.1.3 23091 1bu5A 148 3.741e+01 5nul c.23.5.1 31155 1b21A 110 3.768e+01 1b20A d.1.1.2 36219 2oinC 17 3.797e+01 1jbkA 190 3.854e+01 c.37.1.20 71631 2f5uA 411 3.876e+01 1b3sA 111 3.880e+01 1b20A d.1.1.2 36229 2hztA 99 3.909e+01 1cquA 57 3.935e+01 d.100.1.1 70073 2jtmA 61 3.966e+01