# List of top-scoring protein chains for T0419.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j289	430	1.482		
2yvuA	186	2.866		
2pbrA	195	4.828		
2plrA	213	5.576		
1qzxA	440	9.384	a.24.13.1,a.36.1.1,c.37.1.10	96711,96712,96713
2iyoA	472	11.42		
2iypA	473	11.45		
2iz1A	474	11.47		
3b9qA	302	12.02		
2z0hA	197	12.28		
2og2A	359	12.55		
2qorA	204	13.28		
1ftsA	295	14.52	a.24.13.1,c.37.1.10	16968,32279
1z8fA	228	15.50		
2qy9A	309	15.79		
1e9fA	217	16.21	c.37.1.1	64811
2r44A	331	17.57		
1s4qA	228	18.76	c.37.1.1	98507
1znwA	207	19.54	c.37.1.1	125412
2p90A	319	27.90		
3bb1A	274	31.09		
1h65A	270	31.31	c.37.1.8	65640
3bioA	304	31.87		
1z6gA	218	32.33		
2v3cC	432	32.92		
2f1rA	171	34.27		
1vmaA	306	35.18	a.24.13.1,c.37.1.10	108887,108888
2ofwA	208	38.28		
1j8mF	297	39.65	a.24.13.1,c.37.1.10	62742,62743
2j41A	207	39.68		
2pjzA	263	39.89		
1uj2A	252	40.32	c.37.1.6	99452
1j8yF	297	40.85	a.24.13.1,c.37.1.10	62747,62748
1xrjA	261	41.37	c.37.1.6	122256
1gtvA	214	41.37	c.37.1.1	70537
1gvnB	287	43.08	c.37.1.21	76354
1e9eA	215	43.25	c.37.1.1	64810
1nn5A	215	44.93	c.37.1.1	85892
1e98A	215	45.01	c.37.1.1	64804
2ofxA	207	45.05		
1ukzA	203	47.07	c.37.1.1	31840
2p5tB	253	50.66		
1tevA	196	54.12	c.37.1.1	106817
2hnaA	147	54.12		
4tmkA	213	54.32	c.37.1.1	31930
2bifA	469	57.36	c.37.1.7,c.60.1.4	31963,34009
2ax4A	198	57.54		
1zd8A	227	57.99		
2ak3A	226	58.08	c.37.1.1,g.41.2.1	31892,45193
1bifA	469	58.39	c.37.1.7,c.60.1.4	31961,34003
3bifA	468	58.72	c.37.1.7,c.60.1.4	31962,34008
1nmyA	209	59.86	c.37.1.1	85883
2pezA	179	60.49		
2pzgA	241	62.96		
1kdoA	227	67.29	c.37.1.1	68478
2femA	227	67.90		
1ye8A	178	68.05	c.37.1.11	123010
1mtoA	319	71.42	c.89.1.1	79458
1ltkA	425	71.69	c.86.1.1	84698
1ex7A	186	71.96	c.37.1.1	59537
1ckeA	227	73.10	c.37.1.1	31846
1lv7A	257	73.60	c.37.1.20	78232
2ga8A	359	74.83		
1s9iA	354	79.10	d.144.1.7	112047
1xfjA	261	80.93	d.194.1.2	109585
2pzeA	229	85.86		
2h57A	190	88.25