# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qm8A 337 0.5080 2p67A 341 0.7608 1rz3A 201 0.8198 c.37.1.6 98132 2z0hA 197 0.8555 2ax4A 198 1.046 1in4A 334 1.181 a.4.5.11,c.37.1.20 62597,62598 2vp4A 230 1.210 2p5tB 253 1.782 1oe0A 230 1.831 c.37.1.1 92788 2ccjA 205 2.070 2ak3A 226 2.177 c.37.1.1,g.41.2.1 31892,45193 2pbrA 195 2.239 2pezA 179 2.382 1gtvA 214 2.424 c.37.1.1 70537 1e4yA 214 2.722 c.37.1.1,g.41.2.1 31901,45181 1nn5A 215 3.334 c.37.1.1 85892 1qf9A 194 3.861 c.37.1.1 31848 1p3jA 217 4.105 c.37.1.1,g.41.2.1 94022,94023 2cdnA 201 5.021 c.37.1.1 130289 1vmaA 306 5.344 a.24.13.1,c.37.1.10 108887,108888 1yrbA 262 5.787 c.37.1.10 123915 1p9rA 418 6.910 c.37.1.11 94399 1zm7A 230 6.992 1odfA 290 7.522 c.37.1.6 92782 1s4qA 228 7.649 c.37.1.1 98507 2f1rA 171 7.681 2qt1A 207 7.709 1x6vA 630 8.215 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nksA 194 8.481 c.37.1.1 31886 1z8fA 228 8.936 1khtA 192 9.176 c.37.1.1 84401 2gzaA 361 9.311 1fj2A 232 9.459 c.69.1.14 34720 1nrjB 218 9.587 c.37.1.8 86125 1ukzA 203 9.707 c.37.1.1 31840 1xjcA 169 9.736 c.37.1.10 115387 1zin 217 9.904 2axpA 173 11.00 c.37.1.1 127497 2an9A 207 11.04 c.37.1.1 127037 2b8wA 328 11.26 1in6A 334 11.36 a.4.5.11,c.37.1.20 62601,62602 1ex7A 186 11.51 c.37.1.1 59537 1s96A 219 11.57 c.37.1.1 98740 1uj2A 252 11.72 c.37.1.6 99452 1gky 187 11.75 1akeA 214 13.82 c.37.1.1,g.41.2.1 31905,45185 2c95A 196 14.66 1e9eA 215 14.79 c.37.1.1 64810 1h65A 270 14.83 c.37.1.8 65640 2higA 487 15.00 5tmpA 213 16.41 c.37.1.1 31931 3b9qA 302 16.66 1sq5A 308 16.80 c.37.1.6 105882 1zu4A 320 16.85 1h1nA 305 17.10 c.1.8.3 70855 1tq6A 413 18.30 c.37.1.8 107202 2q8pA 260 18.31 1akyA 220 19.48 c.37.1.1,g.41.2.1 31896,45197 1qhxA 178 19.99 c.37.1.3 31936 2fnaA 357 20.21 a.4.5.11,c.37.1.20 133809,133810 2yvuA 186 21.87 1njgA 250 21.89 c.37.1.20 85785 1rkbA 173 21.98 c.37.1.1 111854 1htwA 158 22.69 c.37.1.18 71083 1lv7A 257 23.03 c.37.1.20 78232 2ff7A 247 24.32 c.37.1.12 133377 1xrjA 261 25.84 c.37.1.6 122256 2qy9A 309 26.09 2g1iA 563 26.30 2oap1 511 27.63 2cbzA 237 27.75 1g6oA 330 28.17 c.37.1.11 32430 1hqcA 324 28.63 a.4.5.11,c.37.1.20 16127,32424 1esmA 316 28.69 c.37.1.6 31953 2ixeA 271 28.87 1ukz 203 29.41 2pt7A 330 30.70 1n55A 251 30.77 c.1.1.1 80007 1zj6A 187 30.79 c.37.1.8 125145 1p5zB 263 32.38 c.37.1.1 87815 2j41A 207 32.41 1ye8A 178 32.48 c.37.1.11 123010 2hu5A 582 32.75 b.69.7.2,c.69.1.33 136763,136764 1znwA 207 32.77 c.37.1.1 125412 2og2A 359 33.01 3c8uA 208 34.83 2bdtA 189 35.82 c.37.1.25 128344 1xwiA 322 35.97 1n2zA 245 36.16 c.92.2.2 79865 3be4A 217 36.42 1ly1A 181 36.95 c.37.1.1 74334 1e9rA 437 36.95 c.37.1.11 64827 2qorA 204 39.91 1kagA 173 40.32 c.37.1.2 72249 1j8mF 297 40.96 a.24.13.1,c.37.1.10 62742,62743 2g8oA 264 42.89 d.117.1.1 134779 1ak2A 233 43.13 c.37.1.1,g.41.2.1 31894,45195 1qhsA 178 43.27 c.37.1.3 31938 2g8mA 264 43.51 1n4aA 252 44.37 c.92.2.2 85317 2eyuA 261 44.42 1nsf 273 45.36 2px0A 296 45.91 1pydA 556 47.16 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1gz0A 253 48.03 c.116.1.1,d.79.3.3 76391,76392 1evfA 264 49.15 d.117.1.1 40932 1jr3A 373 49.54 a.80.1.1,c.37.1.20 63245,63246 2fh5B 214 49.90 c.37.1.8 133478 7timA 247 50.08 c.1.1.1 28457 1hdiA 413 50.19 c.86.1.1 60964 1qqqA 264 51.08 d.117.1.1 40931 3cbwA 353 51.65 2pmkA 243 52.20 2rhmA 193 53.21 1y63A 184 55.29 c.37.1.1 116494 2eu8A 216 55.49 1ev5A 264 55.67 d.117.1.1 40935 1r2rA 248 55.74 c.1.1.1 96875 1hvyA 288 55.76 d.117.1.1 41049 1m7gA 211 56.84 c.37.1.4 78724 1bkpA 278 56.93 d.117.1.1 41029 1qpbA 563 57.41 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1tph1 247 58.18 2pgd 482 58.77 3tmkA 216 58.89 c.37.1.1 31920 1qhfA 240 59.27 c.60.1.1 33960 1i45A 248 60.38 c.1.1.1 61665 1np6A 174 60.75 c.37.1.10 85954 2q3fA 181 60.98 1ofhA 310 61.86 c.37.1.20 86948 2bwjA 199 62.79 1mnaA 298 63.16 c.69.1.22 79322 1viaA 175 63.19 c.37.1.2 100754 1b8sA 504 65.39 c.3.1.2,d.16.1.1 30335,37866 1r6dA 337 65.70 c.2.1.2 97148 1ylhA 560 66.42 1e58A 249 66.81 c.60.1.1 59262 1b02A 279 66.90 d.117.1.1 41035 1z6gA 218 67.62 1gntA 553 67.74 e.26.1.1 70290 1ltqA 301 68.29 c.108.1.9,c.37.1.1 78208,78209 1auoA 218 68.76 c.69.1.14 34716 2pblA 262 69.09 1pvdA 537 70.15 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1xp3A 307 70.24 c.1.15.1 122210 1d2nA 272 71.66 c.37.1.20 32428 2r8bA 251 72.24 1e1dA 553 74.06 e.26.1.1 43363 2tscA 264 76.44 d.117.1.1 40952 1p9bA 442 76.48 c.37.1.10 94385 1phpA 394 76.49 c.86.1.1 35452 1j33A 335 77.01 c.39.1.1 77069 1aiqA 264 77.89 d.117.1.1 40967 1yq2A 1024 79.08 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 4tmkA 213 79.18 c.37.1.1 31930 1amk 251 80.63 2hdwA 367 81.43 3b9pA 297 81.60 2qgnA 322 82.64 1ctqA 166 82.70 c.37.1.8 31965 1m6jA 261 83.86 c.1.1.1 78693 2h17A 181 85.31 1e32A 458 85.53 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2uw1A 338 86.88 2dp3A 257 87.16 1yuwA 554 87.35 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1fl9A 161 88.32 c.37.1.18 70137 1bf6A 291 88.89 c.1.9.3 29065 2h8lA 252 89.19