# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.5792 2ak3A 226 0.6044 c.37.1.1,g.41.2.1 31892,45193 2z0hA 197 0.6887 2vp4A 230 0.7000 1e4yA 214 0.7245 c.37.1.1,g.41.2.1 31901,45181 1rz3A 201 0.7464 c.37.1.6 98132 2qm8A 337 0.8123 2p5tB 253 0.8247 2ccjA 205 0.8264 1ukzA 203 0.9837 c.37.1.1 31840 2pbrA 195 1.304 1oe0A 230 1.342 c.37.1.1 92788 2cdnA 201 1.379 c.37.1.1 130289 2ax4A 198 1.432 1in4A 334 1.490 a.4.5.11,c.37.1.20 62597,62598 1p3jA 217 1.762 c.37.1.1,g.41.2.1 94022,94023 2pezA 179 2.140 1zm7A 230 2.378 1zin 217 2.655 1qf9A 194 3.101 c.37.1.1 31848 1nn5A 215 3.422 c.37.1.1 85892 1ukz 203 3.982 1akeA 214 4.104 c.37.1.1,g.41.2.1 31905,45185 1akyA 220 4.203 c.37.1.1,g.41.2.1 31896,45197 1vmaA 306 4.346 a.24.13.1,c.37.1.10 108887,108888 3be4A 217 4.899 1yrbA 262 5.104 c.37.1.10 123915 2qt1A 207 5.463 1s4qA 228 6.354 c.37.1.1 98507 2c95A 196 6.489 1khtA 192 7.955 c.37.1.1 84401 2an9A 207 8.029 c.37.1.1 127037 1xjcA 169 8.092 c.37.1.10 115387 2gzaA 361 8.550 1gtvA 214 8.716 c.37.1.1 70537 1z8fA 228 8.961 1fj2A 232 9.327 c.69.1.14 34720 1nksA 194 9.805 c.37.1.1 31886 1odfA 290 9.867 c.37.1.6 92782 2f1rA 171 10.11 1p9rA 418 10.29 c.37.1.11 94399 1uj2A 252 10.48 c.37.1.6 99452 1sq5A 308 10.79 c.37.1.6 105882 1s96A 219 10.87 c.37.1.1 98740 2eu8A 216 10.93 1nrjB 218 11.34 c.37.1.8 86125 1ak2A 233 11.49 c.37.1.1,g.41.2.1 31894,45195 1zu4A 320 11.54 1h1nA 305 12.27 c.1.8.3 70855 1h65A 270 12.49 c.37.1.8 65640 1tq6A 413 12.62 c.37.1.8 107202 1gky 187 13.17 1x6vA 630 13.49 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ff7A 247 13.54 c.37.1.12 133377 2b8wA 328 13.88 1ex7A 186 14.18 c.37.1.1 59537 2axpA 173 14.25 c.37.1.1 127497 5tmpA 213 14.26 c.37.1.1 31931 2q8pA 260 14.93 1in6A 334 16.44 a.4.5.11,c.37.1.20 62601,62602 1n55A 251 17.74 c.1.1.1 80007 1p5zB 263 18.80 c.37.1.1 87815 1e9eA 215 19.87 c.37.1.1 64810 1htwA 158 19.97 c.37.1.18 71083 2cbzA 237 20.38 1xrjA 261 20.48 c.37.1.6 122256 1rkbA 173 21.13 c.37.1.1 111854 2ixeA 271 21.62 1nsf 273 22.30 1n2zA 245 22.75 c.92.2.2 79865 2yvuA 186 24.07 1e9rA 437 24.24 c.37.1.11 64827 1esmA 316 24.30 c.37.1.6 31953 2oap1 511 25.01 1znwA 207 26.51 c.37.1.1 125412 1g6oA 330 27.20 c.37.1.11 32430 1hqcA 324 27.31 a.4.5.11,c.37.1.20 16127,32424 1jr3A 373 28.22 a.80.1.1,c.37.1.20 63245,63246 2bwjA 199 28.28 1n4aA 252 28.88 c.92.2.2 85317 2px0A 296 28.93 1fl9A 161 30.46 c.37.1.18 70137 2pmkA 243 30.68 1j8mF 297 30.93 a.24.13.1,c.37.1.10 62742,62743 1lv7A 257 31.52 c.37.1.20 78232 2j41A 207 31.60 3c8uA 208 32.07 2fnaA 357 33.28 a.4.5.11,c.37.1.20 133809,133810 2eyuA 261 33.95 1njgA 250 34.14 c.37.1.20 85785 1xewX 182 34.20 c.37.1.12 115235 1gz0A 253 34.38 c.116.1.1,d.79.3.3 76391,76392 2hu5A 582 35.02 b.69.7.2,c.69.1.33 136763,136764 1xwiA 322 35.52 1z6gA 218 36.02 1tph1 247 36.54 3cbwA 353 37.14 1e32A 458 37.55 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1hdiA 413 37.67 c.86.1.1 60964 3b9qA 302 38.50 2rhmA 193 38.86 1ctqA 166 39.10 c.37.1.8 31965 1ye8A 178 41.12 c.37.1.11 123010 2plrA 213 41.84 1ly1A 181 42.24 c.37.1.1 74334 2atvA 196 42.39 c.37.1.8 127308 1qhsA 178 42.48 c.37.1.3 31938 7timA 247 42.72 c.1.1.1 28457 1r2rA 248 43.42 c.1.1.1 96875 1y63A 184 43.49 c.37.1.1 116494 1d2nA 272 43.74 c.37.1.20 32428 1i45A 248 43.78 c.1.1.1 61665 1gntA 553 43.90 e.26.1.1 70290 2qy9A 309 44.90 1qhxA 178 45.39 c.37.1.3 31936 2higA 487 45.52 2bdtA 189 46.23 c.37.1.25 128344 2pt7A 330 46.37 1j33A 335 46.93 c.39.1.1 77069 1kdoA 227 48.06 c.37.1.1 68478 2fh5B 214 48.13 c.37.1.8 133478 1ylhA 560 48.20 4tmkA 213 48.29 c.37.1.1 31930 1m6jA 261 48.84 c.1.1.1 78693 1yr2A 741 49.01 1sxjA 511 49.37 a.80.1.1,c.37.1.20 106081,106082 1zj6A 187 49.55 c.37.1.8 125145 1yyaA 250 50.98 1e1dA 553 51.11 e.26.1.1 43363 1h1dA 221 51.71 c.66.1.1 83452 1z06A 189 52.54 c.37.1.8 124301 2pblA 262 53.15 1btmA 252 54.45 c.1.1.1 28513 2qorA 204 55.30 1amk 251 55.58 1bu8A 452 57.23 b.12.1.2,c.69.1.19 23647,34795 1phpA 394 58.30 c.86.1.1 35452 1qhfA 240 59.20 c.60.1.1 33960 2q3fA 181 61.79 1e58A 249 63.02 c.60.1.1 59262 2qgnA 322 63.29 2g1iA 563 63.94 1qpbA 563 64.46 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 16pkA 415 65.02 c.86.1.1 35454 2olrA 540 66.19 c.91.1.1,c.109.1.1 139140,139141 1zinA 217 66.53 c.37.1.1,g.41.2.1 31915,45178 1v6sA 390 66.90 c.86.1.1 100424 1kngA 156 67.40 c.47.1.10 72777 1uirA 314 67.61 c.66.1.17 99429 1pydA 556 68.52 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2r8bA 251 68.81 2dp3A 257 70.22 3tmkA 216 70.57 c.37.1.1 31920 1xmiA 291 70.61 c.37.1.12 115489 1r6dA 337 71.87 c.2.1.2 97148 1edg 380 72.38 2p32A 120 72.46 1bif 469 74.12 3b9pA 297 74.19 1zbsA 291 74.78 c.55.1.5,c.55.1.5 124870,124871 2og2A 359 76.52 1ltqA 301 78.07 c.108.1.9,c.37.1.1 78208,78209 1hvyA 288 78.51 d.117.1.1 41049 1f2tA 149 78.94 c.37.1.12 32373 2g8oA 264 80.10 d.117.1.1 134779 1pvdA 537 80.91 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2cyjA 118 83.92 c.103.1.1 131026 1wx1A 335 84.05 1mnaA 298 85.81 c.69.1.22 79322 2g8mA 264 85.88 1np6A 174 87.70 c.37.1.10 85954 1m1nA 491 87.77 c.92.2.3 78417 1l7vC 249 88.07 c.37.1.12 73674 1x3sA 195 88.40 c.37.1.8 121670 1edgA 380 88.61 c.1.8.3 28807 1b02A 279 88.90 d.117.1.1 41035 2etvA 346 89.16 c.92.2.4 132372 1ofhA 310 89.43 c.37.1.20 86948