# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.08264 1e4yA 214 0.1766 c.37.1.1,g.41.2.1 31901,45181 2ax4A 198 0.1771 2pbrA 195 0.2279 2qm8A 337 0.2463 2pezA 179 0.2584 1nn5A 215 0.3252 c.37.1.1 85892 2p67A 341 0.3378 1ukz 203 0.4689 2ccjA 205 0.4708 1x6vA 630 0.6766 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2vp4A 230 0.8030 1akeA 214 0.8435 c.37.1.1,g.41.2.1 31905,45185 1rz3A 201 0.8681 c.37.1.6 98132 2ak3A 226 1.017 c.37.1.1,g.41.2.1 31892,45193 1khtA 192 1.019 c.37.1.1 84401 2p5tB 253 1.033 1gtvA 214 1.094 c.37.1.1 70537 1p3jA 217 1.237 c.37.1.1,g.41.2.1 94022,94023 2f1rA 171 1.364 1qf9A 194 1.369 c.37.1.1 31848 2cdnA 201 1.702 c.37.1.1 130289 5tmpA 213 1.786 c.37.1.1 31931 4tmkA 213 1.789 c.37.1.1 31930 1ukzA 203 1.900 c.37.1.1 31840 2c95A 196 1.909 2yvuA 186 2.221 1in4A 334 2.273 a.4.5.11,c.37.1.20 62597,62598 1s4qA 228 2.756 c.37.1.1 98507 1akyA 220 2.832 c.37.1.1,g.41.2.1 31896,45197 1oe0A 230 2.847 c.37.1.1 92788 1z8fA 228 3.589 1zm7A 230 3.665 1yrbA 262 3.734 c.37.1.10 123915 1vmaA 306 3.748 a.24.13.1,c.37.1.10 108887,108888 2an9A 207 3.875 c.37.1.1 127037 1xjcA 169 3.969 c.37.1.10 115387 1s96A 219 4.099 c.37.1.1 98740 1ex7A 186 4.291 c.37.1.1 59537 1e9eA 215 4.449 c.37.1.1 64810 1gky 187 4.455 1np6A 174 5.176 c.37.1.10 85954 1p9rA 418 5.281 c.37.1.11 94399 1nksA 194 5.612 c.37.1.1 31886 1p5zB 263 6.239 c.37.1.1 87815 1j8mF 297 6.302 a.24.13.1,c.37.1.10 62742,62743 1nrjB 218 7.895 c.37.1.8 86125 1zin 217 7.924 2gzaA 361 7.929 3b9qA 302 8.178 2bwjA 199 8.453 2qy9A 309 9.715 2higA 487 9.97 1m7gA 211 10.21 c.37.1.4 78724 1h1nA 305 10.38 c.1.8.3 70855 1uj2A 252 10.64 c.37.1.6 99452 1zu4A 320 10.99 1zj6A 187 11.13 c.37.1.8 125145 1odfA 290 11.17 c.37.1.6 92782 2qt1A 207 12.31 3tmkA 216 12.43 c.37.1.1 31920 2fh5B 214 12.53 c.37.1.8 133478 1hqcA 324 13.39 a.4.5.11,c.37.1.20 16127,32424 2q8pA 260 13.74 1rkbA 173 14.09 c.37.1.1 111854 1gz0A 253 14.65 c.116.1.1,d.79.3.3 76391,76392 1g6oA 330 14.83 c.37.1.11 32430 2rhmA 193 14.89 1yuwA 554 15.66 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2f7tA 227 15.66 1esmA 316 16.06 c.37.1.6 31953 1n55A 251 16.75 c.1.1.1 80007 1nsf 273 17.25 1znwA 207 17.45 c.37.1.1 125412 1qhxA 178 17.71 c.37.1.3 31936 2ff7A 247 18.14 c.37.1.12 133377 1h65A 270 18.85 c.37.1.8 65640 1z6gA 218 19.84 2axpA 173 20.54 c.37.1.1 127497 1gvnB 287 20.65 c.37.1.21 76354 1kdoA 227 21.22 c.37.1.1 68478 7timA 247 23.05 c.1.1.1 28457 1tph1 247 23.52 1htwA 158 23.54 c.37.1.18 71083 1kagA 173 24.21 c.37.1.2 72249 1hvyA 288 24.50 d.117.1.1 41049 2plrA 213 25.27 1m6jA 261 25.31 c.1.1.1 78693 1i45A 248 25.52 c.1.1.1 61665 1in6A 334 25.59 a.4.5.11,c.37.1.20 62601,62602 2cbzA 237 25.83 2pblA 262 26.05 1ltqA 301 26.43 c.108.1.9,c.37.1.1 78208,78209 2pmkA 243 26.47 1fl9A 161 27.18 c.37.1.18 70137 1ylhA 560 27.19 2eyuA 261 27.45 2bifA 469 28.59 c.37.1.7,c.60.1.4 31963,34009 1xrjA 261 29.14 c.37.1.6 122256 2olrA 540 31.32 c.91.1.1,c.109.1.1 139140,139141 1d6jA 211 31.93 c.37.1.4 31940 2q3fA 181 32.41 1q6zA 528 32.85 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1bf6A 291 33.66 c.1.9.3 29065 3c8uA 208 34.65 1axeA 374 34.76 b.35.1.2,c.2.1.1 24681,29697 1r2rA 248 35.33 c.1.1.1 96875 1ki9A 192 35.34 c.37.1.1 84404 1n4aA 252 35.62 c.92.2.2 85317 1a71A 374 35.76 b.35.1.2,c.2.1.1 24673,29689 1tq6A 413 37.42 c.37.1.8 107202 1qhsA 178 37.59 c.37.1.3 31938 1sq5A 308 37.89 c.37.1.6 105882 2p32A 120 37.89 1ckeA 227 39.47 c.37.1.1 31846 1bif 469 39.69 2ixeA 271 40.33 1bkpA 278 40.53 d.117.1.1 41029 1fj2A 232 40.59 c.69.1.14 34720 2pt7A 330 41.00 2px0A 296 42.36 1yzyA 413 42.81 c.146.1.1 124292 2g1iA 563 43.62 1ctqA 166 43.82 c.37.1.8 31965 2hf9A 226 46.49 2oap1 511 46.62 1amk 251 46.69 2atvA 196 47.38 c.37.1.8 127308 2h17A 181 47.65 1pydA 556 47.88 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3bifA 468 49.21 c.37.1.7,c.60.1.4 31962,34008 1m5wA 243 49.46 c.1.24.1 84836 1d2nA 272 49.89 c.37.1.20 32428 2qorA 204 50.25 1edg 380 51.56 1ye8A 178 52.03 c.37.1.11 123010 1viaA 175 52.08 c.37.1.2 100754 1uxoA 192 52.73 c.69.1.31 108121 1dseA 292 53.20 a.93.1.1 59130 1bifA 469 53.21 c.37.1.7,c.60.1.4 31961,34003 2g8mA 264 53.99 3cbwA 353 54.01 1l8qA 324 54.59 a.4.12.2,c.37.1.20 77809,77810 2j41A 207 55.02 2pfkA 320 55.27 c.89.1.1 35577 1qpbA 563 55.63 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2fh1A 344 55.65 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 1lv7A 257 55.71 c.37.1.20 78232 1ng1 294 55.99 2ga8A 359 56.23 1qhfA 240 56.77 c.60.1.1 33960 1zpdA 568 57.03 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1o3yA 166 57.10 c.37.1.8 86618 1assA 159 57.56 c.8.5.2 30818 1e9rA 437 57.71 c.37.1.11 64827 3be4A 217 58.33 1zinA 217 58.41 c.37.1.1,g.41.2.1 31915,45178 2g8oA 264 58.63 d.117.1.1 134779 1ly1A 181 59.84 c.37.1.1 74334 2og2A 359 59.94 2vqeI 128 60.33 1jb9A 316 60.70 b.43.4.2,c.25.1.1 62840,62841 1n2zA 245 61.28 c.92.2.2 79865 1btmA 252 64.03 c.1.1.1 28513 2hdwA 367 64.91 1c1dA 355 65.96 c.2.1.7,c.58.1.1 30270,33918 2avdA 219 66.44 c.66.1.1 127377 1b02A 279 67.49 d.117.1.1 41035 1u6zA 513 68.76 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3cerA 343 69.34 1t9hA 307 69.68 b.40.4.5,c.37.1.8 112358,112359 1ho1A 242 70.20 c.1.24.1 61097 1jpkA 388 70.77 c.1.22.1 67026 1axgA 374 71.82 b.35.1.2,c.2.1.1 24691,29707 1ls1A 295 72.30 a.24.13.1,c.37.1.10 78170,78171 1dciA 275 72.49 c.14.1.3 30918 1edgA 380 73.05 c.1.8.3 28807 3bdvA 191 77.37 1ev5A 264 77.75 d.117.1.1 40935 2ac7A 235 77.83 c.56.2.1 126543 1p0fA 373 78.39 b.35.1.2,c.2.1.1 87642,87643 1yqtA 538 79.91 2j27A 250 80.14 1ak2A 233 80.31 c.37.1.1,g.41.2.1 31894,45195 1uirA 314 80.43 c.66.1.17 99429 2c31A 568 81.52 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2qxlA 658 82.35 1xwiA 322 82.37 1qqqA 264 82.72 d.117.1.1 40931 1r6dA 337 83.75 c.2.1.2 97148 1of8A 370 83.89 c.1.10.4 92819 2bdtA 189 84.51 c.37.1.25 128344 1hdiA 413 85.07 c.86.1.1 60964 2nq5A 755 85.12 2qgnA 322 85.99 2ihtA 573 86.00 1kngA 156 86.68 c.47.1.10 72777 2d1pA 140 86.87 c.114.1.1 131136 1ee2A 373 86.98 b.35.1.2,c.2.1.1 24663,29679 2eng 210 87.71 2r8bA 251 87.78 1z06A 189 88.28 c.37.1.8 124301 1bupA 386 88.62 c.55.1.1,c.55.1.1 33377,33378 1ypvA 313 88.76 1bu8A 452 88.80 b.12.1.2,c.69.1.19 23647,34795 1b9bA 255 89.07 c.1.1.1 28531 2eu8A 216 89.12 1evfA 264 89.17 d.117.1.1 40932 1egzA 291 89.35 c.1.8.3 28828 1gntA 553 89.69 e.26.1.1 70290 2bjkA 516 89.89