# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.1315 2p67A 341 0.1752 2ak3A 226 0.2580 c.37.1.1,g.41.2.1 31892,45193 2ax4A 198 0.3337 1e4yA 214 0.3829 c.37.1.1,g.41.2.1 31901,45181 2ccjA 205 0.3869 1gtvA 214 0.4547 c.37.1.1 70537 2qm8A 337 0.4803 2vp4A 230 0.6355 1in4A 334 0.6380 a.4.5.11,c.37.1.20 62597,62598 2pbrA 195 0.6518 1rz3A 201 0.6618 c.37.1.6 98132 1p3jA 217 0.7038 c.37.1.1,g.41.2.1 94022,94023 1ukzA 203 0.7250 c.37.1.1 31840 1nn5A 215 0.8650 c.37.1.1 85892 2p5tB 253 0.9683 2pezA 179 1.039 1zin 217 1.042 2cdnA 201 1.116 c.37.1.1 130289 1ukz 203 1.233 1s96A 219 1.408 c.37.1.1 98740 1z8fA 228 1.420 1s4qA 228 1.435 c.37.1.1 98507 1khtA 192 1.549 c.37.1.1 84401 1akeA 214 1.762 c.37.1.1,g.41.2.1 31905,45185 1oe0A 230 1.927 c.37.1.1 92788 1yrbA 262 1.941 c.37.1.10 123915 2eu8A 216 2.024 1qf9A 194 2.061 c.37.1.1 31848 1vmaA 306 2.108 a.24.13.1,c.37.1.10 108887,108888 2bwjA 199 2.255 1zm7A 230 2.457 1nrjB 218 2.461 c.37.1.8 86125 2an9A 207 2.466 c.37.1.1 127037 1ak2A 233 2.471 c.37.1.1,g.41.2.1 31894,45195 1x6vA 630 2.569 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nksA 194 2.993 c.37.1.1 31886 1fj2A 232 3.082 c.69.1.14 34720 1ex7A 186 3.181 c.37.1.1 59537 2q8pA 260 3.587 1akyA 220 3.609 c.37.1.1,g.41.2.1 31896,45197 1p9rA 418 3.701 c.37.1.11 94399 1gky 187 3.839 1nsf 273 3.905 1rkbA 173 4.059 c.37.1.1 111854 1e9eA 215 4.998 c.37.1.1 64810 3be4A 217 5.026 5tmpA 213 5.114 c.37.1.1 31931 2c95A 196 5.897 2qt1A 207 6.147 3tmkA 216 6.328 c.37.1.1 31920 1xjcA 169 6.427 c.37.1.10 115387 1uj2A 252 6.524 c.37.1.6 99452 1zu4A 320 6.708 1esmA 316 6.722 c.37.1.6 31953 1sq5A 308 6.887 c.37.1.6 105882 2gzaA 361 7.581 2f1rA 171 7.656 2qorA 204 7.946 1in6A 334 8.008 a.4.5.11,c.37.1.20 62601,62602 1znwA 207 8.113 c.37.1.1 125412 1z6gA 218 8.635 1e9rA 437 9.134 c.37.1.11 64827 1odfA 290 9.215 c.37.1.6 92782 1lv7A 257 9.793 c.37.1.20 78232 2axpA 173 10.04 c.37.1.1 127497 1htwA 158 10.29 c.37.1.18 71083 2pgd 482 11.37 1xrjA 261 11.52 c.37.1.6 122256 1n2zA 245 11.73 c.92.2.2 79865 2ff7A 247 12.64 c.37.1.12 133377 1qhxA 178 12.96 c.37.1.3 31936 1n4aA 252 13.27 c.92.2.2 85317 1np6A 174 14.22 c.37.1.10 85954 2g1iA 563 14.36 2cbzA 237 14.58 1kagA 173 14.96 c.37.1.2 72249 1j8mF 297 15.35 a.24.13.1,c.37.1.10 62742,62743 2qy9A 309 15.45 1njgA 250 15.60 c.37.1.20 85785 1nf2A 268 16.76 c.108.1.10 91849 1p5zB 263 16.92 c.37.1.1 87815 1h65A 270 16.99 c.37.1.8 65640 1hqcA 324 17.38 a.4.5.11,c.37.1.20 16127,32424 1qhsA 178 17.39 c.37.1.3 31938 1h1nA 305 17.44 c.1.8.3 70855 2ixeA 271 17.49 1n55A 251 19.85 c.1.1.1 80007 3cbwA 353 20.26 1tq6A 413 20.43 c.37.1.8 107202 1y63A 184 21.07 c.37.1.1 116494 2pmkA 243 21.12 1pydA 556 21.43 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3c8uA 208 21.69 3brsA 289 22.64 1d2nA 272 23.72 c.37.1.20 32428 2bdtA 189 24.55 c.37.1.25 128344 1ckeA 227 25.04 c.37.1.1 31846 2fh5B 214 25.39 c.37.1.8 133478 1ye8A 178 25.68 c.37.1.11 123010 3bdvA 191 25.98 1gz0A 253 26.17 c.116.1.1,d.79.3.3 76391,76392 1zj6A 187 27.03 c.37.1.8 125145 1tph1 247 27.57 1r2rA 248 28.34 c.1.1.1 96875 2rhmA 193 28.73 2px0A 296 29.43 3b9qA 302 31.88 1viaA 175 31.91 c.37.1.2 100754 1pvdA 537 32.01 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2d2eA 250 32.09 4tmkA 213 32.64 c.37.1.1 31930 2fnaA 357 33.65 a.4.5.11,c.37.1.20 133809,133810 2b8wA 328 33.69 1zd8A 227 34.56 1mnaA 298 34.60 c.69.1.22 79322 2h8lA 252 34.85 1i45A 248 35.19 c.1.1.1 61665 2eyuA 261 35.72 1s8eA 333 36.09 d.159.1.4 105368 1q6zA 528 36.36 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1qpbA 563 36.62 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1ly1A 181 37.57 c.37.1.1 74334 2avdA 219 38.00 c.66.1.1 127377 2ihtA 573 39.45 2q3fA 181 39.50 3b9pA 297 40.31 2oap1 511 41.16 2atvA 196 41.58 c.37.1.8 127308 2j41A 207 41.84 1m6jA 261 42.14 c.1.1.1 78693 2plrA 213 42.62 2g8oA 264 42.68 d.117.1.1 134779 1amk 251 45.31 2yvuA 186 46.05 2ga8A 359 46.17 2og2A 359 46.86 2dp3A 257 47.14 2pblA 262 47.69 2p90A 319 47.92 1yyaA 250 47.95 2hu5A 582 48.14 b.69.7.2,c.69.1.33 136763,136764 1p9bA 442 48.89 c.37.1.10 94385 2pt7A 330 49.28 2qgnA 322 49.43 7timA 247 51.61 c.1.1.1 28457 1o3yA 166 52.81 c.37.1.8 86618 1ctqA 166 53.20 c.37.1.8 31965 1fl9A 161 53.52 c.37.1.18 70137 2bjkA 516 53.62 1h1dA 221 54.07 c.66.1.1 83452 2g8mA 264 55.60 1yuwA 554 56.10 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1z06A 189 56.43 c.37.1.8 124301 2tscA 264 60.02 d.117.1.1 40952 2pgnA 589 61.08 1ylhA 560 61.16 1xmiA 291 62.48 c.37.1.12 115489 1sgwA 214 64.61 c.37.1.12 105541 1x3sA 195 65.84 c.37.1.8 121670 1xwiA 322 66.40 1ng1 294 66.53 1rkqA 282 67.32 c.108.1.10 97621 1ki9A 192 68.02 c.37.1.1 84404 1e1dA 553 68.13 e.26.1.1 43363 1b9bA 255 68.27 c.1.1.1 28531 2higA 487 68.78 1vg8A 207 69.22 c.37.1.8 108606 1btmA 252 69.52 c.1.1.1 28513 1m7gA 211 71.26 c.37.1.4 78724 1zinA 217 71.82 c.37.1.1,g.41.2.1 31915,45178 1ji0A 240 72.08 c.37.1.12 71665 2c31A 568 73.13 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2bifA 469 73.58 c.37.1.7,c.60.1.4 31963,34009 1qhfA 240 74.78 c.60.1.1 33960 1uxoA 192 74.91 c.69.1.31 108121 2eryA 172 75.01 c.37.1.8 132306 1g6hA 257 75.18 c.37.1.12 60318 1o5xA 248 75.67 c.1.1.1 92528 2h17A 181 76.79 2rgxA 206 76.92 1yq2A 1024 77.24 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1knqA 175 78.87 c.37.1.17 72786 1yqtA 538 79.23 1gntA 553 79.51 e.26.1.1 70290 2pzeA 229 80.71 2j27A 250 81.43 2bmeA 186 83.07 c.37.1.8 128790 2r8bA 251 84.94 2dri 271 85.21 2axtC 473 87.37 1d2kA 392 88.60 c.1.8.5,d.26.3.1 29008,38442 1z5zA 271 88.81 c.37.1.19 124499 1auoA 218 89.12 c.69.1.14 34716 1ursA 402 89.36 c.94.1.1 99833 1bkpA 278 89.72 d.117.1.1 41029