# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.2182 2z0hA 197 0.2732 2ax4A 198 0.3696 2ak3A 226 0.3739 c.37.1.1,g.41.2.1 31892,45193 1e4yA 214 0.4060 c.37.1.1,g.41.2.1 31901,45181 2qm8A 337 0.4673 1gtvA 214 0.5040 c.37.1.1 70537 1in4A 334 0.5949 a.4.5.11,c.37.1.20 62597,62598 2vp4A 230 0.6489 2p5tB 253 0.6514 2ccjA 205 0.6556 1rz3A 201 0.7674 c.37.1.6 98132 1ukzA 203 0.8051 c.37.1.1 31840 1p3jA 217 0.8857 c.37.1.1,g.41.2.1 94022,94023 2pezA 179 0.9783 1zin 217 1.084 2pbrA 195 1.421 1s96A 219 1.466 c.37.1.1 98740 2cdnA 201 1.473 c.37.1.1 130289 1z8fA 228 1.531 1ukz 203 1.633 1qf9A 194 1.727 c.37.1.1 31848 1yrbA 262 1.744 c.37.1.10 123915 1nn5A 215 1.978 c.37.1.1 85892 2an9A 207 1.993 c.37.1.1 127037 1s4qA 228 2.028 c.37.1.1 98507 1x6vA 630 2.049 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1fj2A 232 2.210 c.69.1.14 34720 1oe0A 230 2.309 c.37.1.1 92788 1nrjB 218 2.362 c.37.1.8 86125 1akeA 214 2.367 c.37.1.1,g.41.2.1 31905,45185 1khtA 192 2.418 c.37.1.1 84401 1vmaA 306 2.553 a.24.13.1,c.37.1.10 108887,108888 2eu8A 216 2.628 1ex7A 186 2.801 c.37.1.1 59537 1ak2A 233 2.816 c.37.1.1,g.41.2.1 31894,45195 1zm7A 230 2.913 1p9rA 418 3.537 c.37.1.11 94399 1gky 187 3.797 1akyA 220 3.880 c.37.1.1,g.41.2.1 31896,45197 2q8pA 260 4.326 2bwjA 199 4.481 1nksA 194 6.008 c.37.1.1 31886 3be4A 217 6.139 1nsf 273 6.177 5tmpA 213 6.913 c.37.1.1 31931 2c95A 196 7.032 2qorA 204 7.074 1e9eA 215 7.277 c.37.1.1 64810 2f1rA 171 7.304 1lv7A 257 7.348 c.37.1.20 78232 2axpA 173 7.451 c.37.1.1 127497 2qt1A 207 7.680 1uj2A 252 7.970 c.37.1.6 99452 2gzaA 361 7.974 2pgd 482 8.142 1rkbA 173 8.532 c.37.1.1 111854 1sq5A 308 8.566 c.37.1.6 105882 1zu4A 320 8.731 3tmkA 216 8.739 c.37.1.1 31920 1z6gA 218 9.083 1e9rA 437 9.506 c.37.1.11 64827 1xjcA 169 9.689 c.37.1.10 115387 1odfA 290 9.846 c.37.1.6 92782 1n4aA 252 9.926 c.92.2.2 85317 1esmA 316 10.00 c.37.1.6 31953 1n2zA 245 10.08 c.92.2.2 79865 1in6A 334 10.25 a.4.5.11,c.37.1.20 62601,62602 1qhxA 178 11.96 c.37.1.3 31936 1znwA 207 12.13 c.37.1.1 125412 1htwA 158 12.62 c.37.1.18 71083 2ff7A 247 13.63 c.37.1.12 133377 1j8mF 297 14.41 a.24.13.1,c.37.1.10 62742,62743 1h1nA 305 15.42 c.1.8.3 70855 1xrjA 261 15.84 c.37.1.6 122256 3brsA 289 16.20 1hqcA 324 16.26 a.4.5.11,c.37.1.20 16127,32424 2g1iA 563 16.37 2ixeA 271 16.66 1qhsA 178 17.12 c.37.1.3 31938 1njgA 250 18.02 c.37.1.20 85785 1p5zB 263 18.08 c.37.1.1 87815 2qy9A 309 19.13 1tq6A 413 19.30 c.37.1.8 107202 1zj6A 187 19.88 c.37.1.8 125145 1n55A 251 20.78 c.1.1.1 80007 2cbzA 237 20.90 3c8uA 208 21.08 3bdvA 191 22.43 2fh5B 214 22.73 c.37.1.8 133478 2qgnA 322 22.94 2pmkA 243 23.47 1r2rA 248 24.05 c.1.1.1 96875 1kagA 173 24.15 c.37.1.2 72249 1h65A 270 24.97 c.37.1.8 65640 1mnaA 298 25.28 c.69.1.22 79322 2bdtA 189 26.02 c.37.1.25 128344 1pydA 556 26.30 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1tph1 247 26.51 1gz0A 253 26.88 c.116.1.1,d.79.3.3 76391,76392 1y63A 184 27.10 c.37.1.1 116494 2pblA 262 27.37 3b9qA 302 28.92 1d2nA 272 29.04 c.37.1.20 32428 2fnaA 357 29.11 a.4.5.11,c.37.1.20 133809,133810 2p90A 319 29.97 1s8eA 333 30.77 d.159.1.4 105368 2rhmA 193 31.43 2px0A 296 31.68 1p9bA 442 31.75 c.37.1.10 94385 1np6A 174 32.44 c.37.1.10 85954 2j41A 207 33.52 2d2eA 250 33.90 1ly1A 181 34.16 c.37.1.1 74334 2hu5A 582 34.33 b.69.7.2,c.69.1.33 136763,136764 1i45A 248 35.67 c.1.1.1 61665 1qpbA 563 36.10 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1pvdA 537 36.34 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2oap1 511 37.63 2b8wA 328 37.68 3cbwA 353 37.72 2q3fA 181 37.89 1ye8A 178 38.19 c.37.1.11 123010 1nf2A 268 38.60 c.108.1.10 91849 2h8lA 252 39.38 3b9pA 297 39.78 1ckeA 227 40.13 c.37.1.1 31846 2avdA 219 42.23 c.66.1.1 127377 1o3yA 166 42.51 c.37.1.8 86618 2eyuA 261 42.84 1amk 251 43.05 1yuwA 554 43.54 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2uw1A 338 45.21 1g6oA 330 47.30 c.37.1.11 32430 1m6jA 261 47.75 c.1.1.1 78693 2og2A 359 48.51 2g8oA 264 49.23 d.117.1.1 134779 2r8bA 251 49.34 2bjkA 516 50.61 7timA 247 50.62 c.1.1.1 28457 2higA 487 51.28 1fl9A 161 51.31 c.37.1.18 70137 2ga8A 359 52.71 1zd8A 227 53.51 2ihtA 573 54.04 2dri 271 54.54 2pt7A 330 54.65 2dp3A 257 55.35 2h17A 181 55.87 1jr3A 373 56.59 a.80.1.1,c.37.1.20 63245,63246 1viaA 175 58.81 c.37.1.2 100754 1d2kA 392 58.84 c.1.8.5,d.26.3.1 29008,38442 1xmiA 291 59.67 c.37.1.12 115489 1q6zA 528 60.03 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1evfA 264 61.70 d.117.1.1 40932 2yvuA 186 61.74 2g8mA 264 62.01 1ng1 294 62.34 1b8sA 504 62.56 c.3.1.2,d.16.1.1 30335,37866 1xwiA 322 63.02 1qqqA 264 63.07 d.117.1.1 40931 1yyaA 250 64.01 2atvA 196 64.31 c.37.1.8 127308 2tscA 264 64.87 d.117.1.1 40952 2bifA 469 65.26 c.37.1.7,c.60.1.4 31963,34009 1j33A 335 65.69 c.39.1.1 77069 1h1dA 221 65.90 c.66.1.1 83452 1e1dA 553 69.37 e.26.1.1 43363 1zinA 217 71.91 c.37.1.1,g.41.2.1 31915,45178 1ev5A 264 72.49 d.117.1.1 40935 2h3hA 313 73.07 1o5xA 248 75.19 c.1.1.1 92528 1gvnB 287 75.59 c.37.1.21 76354 1hvyA 288 75.63 d.117.1.1 41049 1j8yF 297 75.90 a.24.13.1,c.37.1.10 62747,62748 1x3sA 195 77.64 c.37.1.8 121670 1efdN 266 78.55 c.92.2.1 35597 2f2eA 146 79.11 a.4.5.69 132808 1qhfA 240 80.03 c.60.1.1 33960 2axtC 473 81.22 1auoA 218 81.96 c.69.1.14 34716 2rjoA 332 82.75 1yq2A 1024 82.82 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1go2A 304 83.03 b.43.4.2,c.25.1.1 76243,76244 1g6hA 257 83.82 c.37.1.12 60318 1edqA 540 84.67 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1b9bA 255 84.75 c.1.1.1 28531 1gajA 257 85.27 c.37.1.12 60416 1m7gA 211 85.44 c.37.1.4 78724 2c31A 568 85.50 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2j27A 250 87.20 2j2fA 363 87.52 1sgwA 214 87.70 c.37.1.12 105541 2plrA 213 88.39 1uxoA 192 88.98 c.69.1.31 108121 1z06A 189 89.44 c.37.1.8 124301 2pgnA 589 89.67