# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.1625 2z0hA 197 0.2001 2qm8A 337 0.3128 2ak3A 226 0.3385 c.37.1.1,g.41.2.1 31892,45193 2ax4A 198 0.4712 1e4yA 214 0.5440 c.37.1.1,g.41.2.1 31901,45181 1in4A 334 0.5454 a.4.5.11,c.37.1.20 62597,62598 2vp4A 230 0.5985 1gtvA 214 0.6287 c.37.1.1 70537 2p5tB 253 0.7052 1rz3A 201 0.7521 c.37.1.6 98132 2ccjA 205 0.8442 1ukzA 203 1.057 c.37.1.1 31840 1zin 217 1.119 1s96A 219 1.216 c.37.1.1 98740 2pezA 179 1.231 1p3jA 217 1.407 c.37.1.1,g.41.2.1 94022,94023 1z8fA 228 1.541 1khtA 192 1.601 c.37.1.1 84401 2an9A 207 1.641 c.37.1.1 127037 1s4qA 228 1.785 c.37.1.1 98507 1ukz 203 1.802 1vmaA 306 1.915 a.24.13.1,c.37.1.10 108887,108888 1nn5A 215 1.950 c.37.1.1 85892 2pbrA 195 2.071 2cdnA 201 2.243 c.37.1.1 130289 1yrbA 262 2.254 c.37.1.10 123915 1nrjB 218 2.302 c.37.1.8 86125 1x6vA 630 2.316 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1oe0A 230 2.419 c.37.1.1 92788 1qf9A 194 2.462 c.37.1.1 31848 1zm7A 230 2.815 1ex7A 186 2.858 c.37.1.1 59537 2bwjA 199 2.898 1akeA 214 3.113 c.37.1.1,g.41.2.1 31905,45185 1gky 187 3.460 2eu8A 216 3.627 1fj2A 232 3.671 c.69.1.14 34720 1ak2A 233 3.839 c.37.1.1,g.41.2.1 31894,45195 2q8pA 260 3.970 1p9rA 418 4.017 c.37.1.11 94399 1nksA 194 4.115 c.37.1.1 31886 1akyA 220 5.348 c.37.1.1,g.41.2.1 31896,45197 1uj2A 252 5.568 c.37.1.6 99452 1nsf 273 5.766 2c95A 196 5.850 5tmpA 213 6.173 c.37.1.1 31931 1sq5A 308 6.454 c.37.1.6 105882 1esmA 316 6.455 c.37.1.6 31953 1rkbA 173 6.688 c.37.1.1 111854 1zu4A 320 7.425 2f1rA 171 7.522 2qorA 204 7.845 2axpA 173 7.971 c.37.1.1 127497 1e9eA 215 8.110 c.37.1.1 64810 3be4A 217 8.157 1znwA 207 8.588 c.37.1.1 125412 2pgd 482 8.645 2qt1A 207 8.753 2gzaA 361 8.778 1e9rA 437 8.796 c.37.1.11 64827 1xjcA 169 8.894 c.37.1.10 115387 1odfA 290 8.967 c.37.1.6 92782 1z6gA 218 9.620 1in6A 334 10.24 a.4.5.11,c.37.1.20 62601,62602 1lv7A 257 10.35 c.37.1.20 78232 1n2zA 245 11.00 c.92.2.2 79865 3tmkA 216 11.61 c.37.1.1 31920 1htwA 158 12.15 c.37.1.18 71083 1xrjA 261 12.83 c.37.1.6 122256 1n4aA 252 12.92 c.92.2.2 85317 2g1iA 563 13.72 1hqcA 324 14.54 a.4.5.11,c.37.1.20 16127,32424 2ff7A 247 14.65 c.37.1.12 133377 1pydA 556 15.89 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1j8mF 297 16.08 a.24.13.1,c.37.1.10 62742,62743 1h1nA 305 16.11 c.1.8.3 70855 1qhxA 178 16.94 c.37.1.3 31936 2ixeA 271 17.23 1njgA 250 17.66 c.37.1.20 85785 2cbzA 237 17.77 2qy9A 309 17.98 1tq6A 413 18.27 c.37.1.8 107202 3c8uA 208 18.61 2hu5A 582 21.21 b.69.7.2,c.69.1.33 136763,136764 1qhsA 178 21.35 c.37.1.3 31938 2qgnA 322 21.69 2pmkA 243 21.82 1kagA 173 22.81 c.37.1.2 72249 2fh5B 214 23.47 c.37.1.8 133478 1mnaA 298 23.57 c.69.1.22 79322 3bdvA 191 24.17 3brsA 289 24.20 2pblA 262 24.26 1nf2A 268 25.08 c.108.1.10 91849 1qpbA 563 25.09 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1n55A 251 25.37 c.1.1.1 80007 2fnaA 357 26.11 a.4.5.11,c.37.1.20 133809,133810 2b8wA 328 26.21 1h65A 270 26.54 c.37.1.8 65640 2j41A 207 26.58 1y63A 184 26.58 c.37.1.1 116494 2bdtA 189 27.20 c.37.1.25 128344 1gz0A 253 27.46 c.116.1.1,d.79.3.3 76391,76392 1p9bA 442 28.63 c.37.1.10 94385 1ye8A 178 29.13 c.37.1.11 123010 1pvdA 537 29.29 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2d2eA 250 29.32 1d2nA 272 30.97 c.37.1.20 32428 1np6A 174 31.13 c.37.1.10 85954 1p5zB 263 31.46 c.37.1.1 87815 1zj6A 187 32.41 c.37.1.8 125145 1r2rA 248 33.59 c.1.1.1 96875 1tph1 247 34.10 2q3fA 181 34.21 2rhmA 193 34.79 2g8oA 264 35.24 d.117.1.1 134779 3cbwA 353 35.75 2p90A 319 36.08 2px0A 296 37.37 2oap1 511 37.47 2yvuA 186 37.65 3b9qA 302 38.05 1ckeA 227 38.44 c.37.1.1 31846 2ga8A 359 38.90 2r8bA 251 38.96 2h8lA 252 39.01 1ly1A 181 39.21 c.37.1.1 74334 2higA 487 41.01 1i45A 248 41.09 c.1.1.1 61665 1zd8A 227 41.77 2g8mA 264 43.07 2ihtA 573 43.08 2eyuA 261 43.17 1s8eA 333 43.41 d.159.1.4 105368 2avdA 219 43.58 c.66.1.1 127377 1viaA 175 44.01 c.37.1.2 100754 1d2kA 392 44.39 c.1.8.5,d.26.3.1 29008,38442 1fl9A 161 44.59 c.37.1.18 70137 3b9pA 297 45.32 1hvyA 288 47.08 d.117.1.1 41049 2tscA 264 47.53 d.117.1.1 40952 2bifA 469 50.16 c.37.1.7,c.60.1.4 31963,34009 2og2A 359 50.90 1evfA 264 51.78 d.117.1.1 40932 1q6zA 528 53.22 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1qqqA 264 53.32 d.117.1.1 40931 1g6oA 330 55.30 c.37.1.11 32430 1yyaA 250 55.93 1ev5A 264 56.01 d.117.1.1 40935 2atvA 196 56.29 c.37.1.8 127308 1amk 251 58.51 1jr3A 373 59.77 a.80.1.1,c.37.1.20 63245,63246 1uxoA 192 59.77 c.69.1.31 108121 1o3yA 166 60.43 c.37.1.8 86618 1bkpA 278 61.03 d.117.1.1 41029 1b8sA 504 62.17 c.3.1.2,d.16.1.1 30335,37866 1auoA 218 62.49 c.69.1.14 34716 2dp3A 257 63.01 1sgwA 214 63.72 c.37.1.12 105541 1m6jA 261 64.46 c.1.1.1 78693 2axtC 473 64.73 7timA 247 64.87 c.1.1.1 28457 2pt7A 330 64.99 1ylhA 560 65.22 1xwiA 322 65.30 1ng1 294 65.57 1m7gA 211 65.65 c.37.1.4 78724 1efdN 266 66.33 c.92.2.1 35597 1ji0A 240 66.58 c.37.1.12 71665 1e1dA 553 67.27 e.26.1.1 43363 1h1dA 221 67.39 c.66.1.1 83452 1g6hA 257 67.96 c.37.1.12 60318 1edg 380 69.18 1aiqA 264 69.53 d.117.1.1 40967 1gvnB 287 69.80 c.37.1.21 76354 1qhfA 240 70.38 c.60.1.1 33960 1b02A 279 70.66 d.117.1.1 41035 1edgA 380 70.76 c.1.8.3 28807 1yuwA 554 71.40 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1e32A 458 71.75 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2dri 271 72.96 2c31A 568 73.69 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2p32A 120 73.93 1j33A 335 74.06 c.39.1.1 77069 2f2eA 146 74.23 a.4.5.69 132808 2h17A 181 75.59 1ofhA 310 76.91 c.37.1.20 86948 1z5zA 271 78.05 c.37.1.19 124499 1xmiA 291 79.25 c.37.1.12 115489 1yqtA 538 79.97 1zinA 217 81.62 c.37.1.1,g.41.2.1 31915,45178 1edqA 540 81.98 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1go2A 304 82.44 b.43.4.2,c.25.1.1 76243,76244 2bjkA 516 83.04 2rgxA 206 84.11 1vg8A 207 84.53 c.37.1.8 108606 2qw5A 335 88.09 2z3zA 706 88.45