# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s4qA 228 0.3838 c.37.1.1 98507 1rz3A 201 0.7813 c.37.1.6 98132 1rkbA 173 0.999 c.37.1.1 111854 2ax4A 198 1.065 2ak3A 226 1.443 c.37.1.1,g.41.2.1 31892,45193 2p5tB 253 1.536 1znwA 207 1.559 c.37.1.1 125412 1in4A 334 1.570 a.4.5.11,c.37.1.20 62597,62598 2pezA 179 1.623 2z0hA 197 1.663 2axpA 173 1.707 c.37.1.1 127497 1nn5A 215 1.726 c.37.1.1 85892 2yvuA 186 2.191 1ukz 203 2.795 2rhmA 193 3.069 1z8fA 228 3.496 2c95A 196 3.606 2ccjA 205 4.037 2qorA 204 4.050 2pbrA 195 4.247 1khtA 192 5.003 c.37.1.1 84401 1gtvA 214 5.502 c.37.1.1 70537 1hqcA 324 7.086 a.4.5.11,c.37.1.20 16127,32424 1oe0A 230 8.068 c.37.1.1 92788 1ukzA 203 8.237 c.37.1.1 31840 2qt1A 207 8.599 1s96A 219 8.695 c.37.1.1 98740 1np6A 174 10.08 c.37.1.10 85954 5tmpA 213 10.53 c.37.1.1 31931 2p67A 341 10.76 2g1iA 563 10.77 1ex7A 186 10.95 c.37.1.1 59537 1yuwA 554 11.08 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1y63A 184 11.65 c.37.1.1 116494 1zin 217 12.13 1in6A 334 12.24 a.4.5.11,c.37.1.20 62601,62602 1x6vA 630 12.52 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nksA 194 12.99 c.37.1.1 31886 1gky 187 13.17 1xjcA 169 13.92 c.37.1.10 115387 2cbzA 237 14.19 1bupA 386 14.84 c.55.1.1,c.55.1.1 33377,33378 1jjvA 206 15.14 c.37.1.1 71698 2j41A 207 15.18 3tmkA 216 15.64 c.37.1.1 31920 1qf9A 194 16.03 c.37.1.1 31848 1odfA 290 16.20 c.37.1.6 92782 4tmkA 213 16.22 c.37.1.1 31930 1nrjB 218 16.73 c.37.1.8 86125 1kay 381 17.29 1e9eA 215 17.57 c.37.1.1 64810 1h65A 270 18.02 c.37.1.8 65640 1zd8A 227 19.45 1pydA 556 19.51 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1sq5A 308 19.54 c.37.1.6 105882 1ba1 386 20.29 2f1rA 171 20.46 2vp4A 230 20.80 1qpbA 563 21.19 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2ga8A 359 21.19 1e4yA 214 22.53 c.37.1.1,g.41.2.1 31901,45181 1p5zB 263 22.64 c.37.1.1 87815 2ff7A 247 22.91 c.37.1.12 133377 1qhxA 178 23.80 c.37.1.3 31936 2bdtA 189 24.78 c.37.1.25 128344 2pmkA 243 26.90 1p3jA 217 27.07 c.37.1.1,g.41.2.1 94022,94023 2bwjA 199 28.15 2gzaA 361 28.49 1knqA 175 28.93 c.37.1.17 72786 1akyA 220 29.30 c.37.1.1,g.41.2.1 31896,45197 2plrA 213 29.33 1vmaA 306 29.44 a.24.13.1,c.37.1.10 108887,108888 1n55A 251 30.20 c.1.1.1 80007 1gvnB 287 32.22 c.37.1.21 76354 1lv7A 257 34.05 c.37.1.20 78232 1m6jA 261 34.24 c.1.1.1 78693 1n4aA 252 34.46 c.92.2.2 85317 1p9rA 418 34.57 c.37.1.11 94399 1a8y 367 34.99 1qhsA 178 36.26 c.37.1.3 31938 1m7gA 211 36.97 c.37.1.4 78724 1ho1A 242 37.93 c.1.24.1 61097 2f2eA 146 38.29 a.4.5.69 132808 1esmA 316 38.50 c.37.1.6 31953 2an9A 207 39.03 c.37.1.1 127037 1kngA 156 40.22 c.47.1.10 72777 1ki9A 192 41.64 c.37.1.1 84404 2ixeA 271 42.47 2og2A 359 42.77 1mnaA 298 42.95 c.69.1.22 79322 1h1nA 305 44.12 c.1.8.3 70855 1z6gA 218 44.19 1z5zA 271 45.24 c.37.1.19 124499 1n2zA 245 45.68 c.92.2.2 79865 1zpdA 568 45.96 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1uj2A 252 46.16 c.37.1.6 99452 1i45A 248 46.26 c.1.1.1 61665 1zm7A 230 48.60 1zinA 217 50.11 c.37.1.1,g.41.2.1 31915,45178 1jcrA 377 50.50 a.118.6.1 66506 2cdnA 201 51.62 c.37.1.1 130289 3c8uA 208 52.62 7timA 247 53.03 c.1.1.1 28457 1kagA 173 53.24 c.37.1.2 72249 2b30A 301 54.05 c.108.1.10 127759 1amk 251 55.74 2qm8A 337 56.14 1ak2A 233 56.47 c.37.1.1,g.41.2.1 31894,45195 1fj2A 232 57.52 c.69.1.14 34720 1nf2A 268 60.55 c.108.1.10 91849 1ji0A 240 62.38 c.37.1.12 71665 1e9rA 437 63.09 c.37.1.11 64827 3b9qA 302 63.32 1rxqA 178 63.47 a.213.1.1 105118 1kdoA 227 63.47 c.37.1.1 68478 1bifA 469 64.81 c.37.1.7,c.60.1.4 31961,34003 2b1kA 168 65.01 1r2rA 248 65.41 c.1.1.1 96875 1xmiA 291 65.62 c.37.1.12 115489 2o70A 174 66.01 1r2fA 319 66.36 a.25.1.2 16800 1tq6A 413 67.25 c.37.1.8 107202 1kv5A 250 67.76 c.1.1.1 73052 1dciA 275 68.48 c.14.1.3 30918 1tpfA 250 68.97 c.1.1.1 28467 2bbsA 290 69.88 1yrbA 262 72.92 c.37.1.10 123915 2q8pA 260 72.94 1zj6A 187 73.37 c.37.1.8 125145 2fswA 107 73.58 a.4.5.69 134042 1zu4A 320 73.90 1kezA 300 74.79 c.69.1.22 68546 1akeA 214 75.90 c.37.1.1,g.41.2.1 31905,45185 2pzeA 229 76.38 2d2eA 250 76.45 1vsrA 136 79.91 c.52.1.15 33332 2p1aA 154 81.39 2q37A 181 81.54 2px0A 296 81.79 1g6hA 257 82.73 c.37.1.12 60318 1a8yA 367 83.72 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1uuyA 167 84.09 c.57.1.1 108059 1yqtA 538 84.25 1q6zA 528 85.36 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1kgdA 180 85.42 c.37.1.1 68582 1yg2A 179 85.71 a.4.5.61 116681 1uxoA 192 85.72 c.69.1.31 108121 1pvdA 537 89.48 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778