# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.2362 1e4yA 214 0.2913 c.37.1.1,g.41.2.1 31901,45181 1in4A 334 0.6891 a.4.5.11,c.37.1.20 62597,62598 1rz3A 201 0.7071 c.37.1.6 98132 2qm8A 337 0.7688 2pbrA 195 0.7925 2ak3A 226 0.9122 c.37.1.1,g.41.2.1 31892,45193 2p5tB 253 0.9303 1p3jA 217 0.9561 c.37.1.1,g.41.2.1 94022,94023 1nn5A 215 0.9752 c.37.1.1 85892 1gtvA 214 0.9842 c.37.1.1 70537 2p67A 341 0.9853 2ccjA 205 1.057 2ax4A 198 1.154 2pezA 179 1.187 1zin 217 1.270 1qf9A 194 1.703 c.37.1.1 31848 1akeA 214 2.313 c.37.1.1,g.41.2.1 31905,45185 2vp4A 230 2.830 1ukz 203 2.835 2cdnA 201 2.858 c.37.1.1 130289 1p9rA 418 3.006 c.37.1.11 94399 1ukzA 203 3.062 c.37.1.1 31840 1s4qA 228 3.139 c.37.1.1 98507 1in6A 334 3.152 a.4.5.11,c.37.1.20 62601,62602 1nrjB 218 3.328 c.37.1.8 86125 1yrbA 262 3.386 c.37.1.10 123915 1uj2A 252 3.586 c.37.1.6 99452 1vmaA 306 4.112 a.24.13.1,c.37.1.10 108887,108888 2c95A 196 4.532 1oe0A 230 4.721 c.37.1.1 92788 1fj2A 232 5.090 c.69.1.14 34720 1akyA 220 5.314 c.37.1.1,g.41.2.1 31896,45197 1gky 187 5.355 1khtA 192 5.800 c.37.1.1 84401 1ex7A 186 6.158 c.37.1.1 59537 1s96A 219 6.161 c.37.1.1 98740 1h65A 270 6.448 c.37.1.8 65640 1z8fA 228 6.785 1rkbA 173 6.802 c.37.1.1 111854 2gzaA 361 6.946 1lv7A 257 7.193 c.37.1.20 78232 2an9A 207 7.623 c.37.1.1 127037 5tmpA 213 7.776 c.37.1.1 31931 2yvuA 186 8.652 1np6A 174 9.108 c.37.1.10 85954 4tmkA 213 9.130 c.37.1.1 31930 1x6vA 630 9.277 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1e9eA 215 9.403 c.37.1.1 64810 2eu8A 216 9.478 3tmkA 216 9.819 c.37.1.1 31920 2b8wA 328 10.93 1qhxA 178 11.46 c.37.1.3 31936 1xjcA 169 11.69 c.37.1.10 115387 1ak2A 233 12.16 c.37.1.1,g.41.2.1 31894,45195 2qt1A 207 12.43 2f1rA 171 13.10 3be4A 217 13.17 1kagA 173 13.36 c.37.1.2 72249 1znwA 207 13.50 c.37.1.1 125412 2axpA 173 13.58 c.37.1.1 127497 2ff7A 247 13.81 c.37.1.12 133377 2qorA 204 14.13 2bwjA 199 14.35 1zm7A 230 14.82 1g6oA 330 15.18 c.37.1.11 32430 3b9qA 302 15.20 1z6gA 218 15.50 1xrjA 261 15.84 c.37.1.6 122256 1p5zB 263 15.92 c.37.1.1 87815 1tq6A 413 16.03 c.37.1.8 107202 2q8pA 260 16.35 1yq2A 1024 16.77 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1nksA 194 16.82 c.37.1.1 31886 2cbzA 237 17.42 2qy9A 309 17.51 2g1iA 563 19.49 2ixeA 271 19.75 2rhmA 193 20.54 1n4aA 252 20.60 c.92.2.2 85317 1h1nA 305 20.78 c.1.8.3 70855 1n2zA 245 20.89 c.92.2.2 79865 1pydA 556 21.50 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2dri 271 22.67 1zu4A 320 23.41 2pmkA 243 24.96 1hqcA 324 25.17 a.4.5.11,c.37.1.20 16127,32424 1q6zA 528 25.98 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2fh5B 214 26.12 c.37.1.8 133478 1j8mF 297 26.37 a.24.13.1,c.37.1.10 62742,62743 1zpdA 568 26.47 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2oap1 511 26.50 2eyuA 261 27.21 1htwA 158 28.66 c.37.1.18 71083 1zinA 217 28.73 c.37.1.1,g.41.2.1 31915,45178 1e32A 458 29.42 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1n55A 251 29.98 c.1.1.1 80007 1qhsA 178 31.80 c.37.1.3 31938 1qpbA 563 31.97 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2q3fA 181 32.65 1s8eA 333 33.36 d.159.1.4 105368 1odfA 290 33.43 c.37.1.6 92782 1ckeA 227 33.71 c.37.1.1 31846 3cbwA 353 34.70 2bdtA 189 35.16 c.37.1.25 128344 1ye8A 178 35.73 c.37.1.11 123010 1pvdA 537 36.34 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2plrA 213 36.62 2h8lA 252 36.84 1viaA 175 39.25 c.37.1.2 100754 2og2A 359 39.56 1sq5A 308 39.94 c.37.1.6 105882 1kdoA 227 40.58 c.37.1.1 68478 1auoA 218 41.01 c.69.1.14 34716 1zj6A 187 41.47 c.37.1.8 125145 1e1dA 553 41.96 e.26.1.1 43363 1gz0A 253 41.98 c.116.1.1,d.79.3.3 76391,76392 2higA 487 42.10 1ylhA 560 42.24 2ga8A 359 42.81 2j41A 207 42.85 2hu5A 582 45.79 b.69.7.2,c.69.1.33 136763,136764 1ly1A 181 47.16 c.37.1.1 74334 2ihtA 573 47.57 1vg8A 207 48.48 c.37.1.8 108606 1y63A 184 48.55 c.37.1.1 116494 2nxwA 565 50.14 1e9rA 437 51.40 c.37.1.11 64827 3bdvA 191 52.08 1njgA 250 52.31 c.37.1.20 85785 2px0A 296 52.95 2avdA 219 53.27 c.66.1.1 127377 1hdiA 413 54.09 c.86.1.1 60964 1kngA 156 54.99 c.47.1.10 72777 1i45A 248 55.53 c.1.1.1 61665 1m7gA 211 55.73 c.37.1.4 78724 3b9pA 297 56.37 1of8A 370 57.25 c.1.10.4 92819 2qw5A 335 59.01 1h1dA 221 60.04 c.66.1.1 83452 3c8uA 208 61.81 2bjkA 516 63.37 2fnaA 357 64.64 a.4.5.11,c.37.1.20 133809,133810 1xp3A 307 66.43 c.1.15.1 122210 7timA 247 68.67 c.1.1.1 28457 1ltqA 301 69.90 c.108.1.9,c.37.1.1 78208,78209 1gntA 553 71.37 e.26.1.1 70290 1tph1 247 71.92 2pgd 482 72.35 2ex4A 241 72.46 c.66.1.42 132516 1bf6A 291 72.63 c.1.9.3 29065 2pt7A 330 72.71 2olrA 540 73.38 c.91.1.1,c.109.1.1 139140,139141 1r2rA 248 74.33 c.1.1.1 96875 1ki9A 192 74.85 c.37.1.1 84404 2hdwA 367 77.64 1ctqA 166 79.64 c.37.1.8 31965 2hf9A 226 81.27 1ofhA 310 82.82 c.37.1.20 86948 1m6jA 261 83.47 c.1.1.1 78693 1l8qA 324 85.53 a.4.12.2,c.37.1.20 77809,77810 2dp3A 257 86.09 1zjrA 211 86.31 1z06A 189 86.59 c.37.1.8 124301 1xmiA 291 86.83 c.37.1.12 115489 1gvnB 287 89.33 c.37.1.21 76354 1amk 251 89.87