# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e4yA 214 0.4536 c.37.1.1,g.41.2.1 31901,45181 2qm8A 337 0.6794 2z0hA 197 1.332 2ak3A 226 1.853 c.37.1.1,g.41.2.1 31892,45193 2axpA 173 2.343 c.37.1.1 127497 2eu8A 216 2.551 1s4qA 228 3.253 c.37.1.1 98507 2ccjA 205 3.620 2pbrA 195 3.661 1p3jA 217 3.836 c.37.1.1,g.41.2.1 94022,94023 1rz3A 201 4.533 c.37.1.6 98132 1yq2A 1024 4.721 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1gtvA 214 5.289 c.37.1.1 70537 1nn5A 215 5.386 c.37.1.1 85892 1d2kA 392 5.561 c.1.8.5,d.26.3.1 29008,38442 2p67A 341 5.563 1x6vA 630 6.085 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qf9A 194 6.114 c.37.1.1 31848 3be4A 217 6.122 1gky 187 6.514 1ukzA 203 6.568 c.37.1.1 31840 1ex7A 186 6.999 c.37.1.1 59537 1zin 217 7.031 2vp4A 230 7.413 1ukz 203 7.642 2cdnA 201 7.739 c.37.1.1 130289 2ax4A 198 8.833 1rkbA 173 9.008 c.37.1.1 111854 1akeA 214 9.020 c.37.1.1,g.41.2.1 31905,45185 1akyA 220 9.360 c.37.1.1,g.41.2.1 31896,45197 1h65A 270 9.397 c.37.1.8 65640 4tmkA 213 9.437 c.37.1.1 31930 2bwjA 199 10.44 1nrjB 218 10.44 c.37.1.8 86125 1ofhA 310 11.30 c.37.1.20 86948 1z6gA 218 11.30 1vmaA 306 11.56 a.24.13.1,c.37.1.10 108887,108888 1uj2A 252 11.58 c.37.1.6 99452 1znwA 207 12.07 c.37.1.1 125412 1s96A 219 12.19 c.37.1.1 98740 2p5tB 253 13.04 2qorA 204 13.43 5tmpA 213 13.89 c.37.1.1 31931 2yvuA 186 14.63 2pezA 179 14.99 1mnaA 298 15.38 c.69.1.22 79322 1yrbA 262 15.41 c.37.1.10 123915 1e9rA 437 16.24 c.37.1.11 64827 2q3fA 181 16.79 1fj2A 232 17.04 c.69.1.14 34720 1ak2A 233 17.90 c.37.1.1,g.41.2.1 31894,45195 1e1dA 553 18.16 e.26.1.1 43363 2fh5B 214 18.24 c.37.1.8 133478 2c95A 196 18.40 1hqcA 324 18.93 a.4.5.11,c.37.1.20 16127,32424 1auoA 218 18.93 c.69.1.14 34716 1r6dA 337 19.04 c.2.1.2 97148 2phzA 311 19.19 1z8fA 228 19.32 3b9qA 302 19.38 1nksA 194 19.48 c.37.1.1 31886 1e9eA 215 19.58 c.37.1.1 64810 1kdoA 227 19.63 c.37.1.1 68478 2qy9A 309 20.84 1lv7A 257 20.96 c.37.1.20 78232 2i5iA 263 21.87 2og2A 359 22.80 1tq6A 413 22.95 c.37.1.8 107202 1oe0A 230 23.17 c.37.1.1 92788 2z1aA 552 23.37 3b40A 417 24.24 2qt1A 207 24.36 2an9A 207 24.48 c.37.1.1 127037 1xpmA 396 25.00 c.95.1.2,c.95.1.2 115759,115760 1ckeA 227 25.06 c.37.1.1 31846 1zu4A 320 25.57 2q8pA 260 25.77 1khtA 192 26.49 c.37.1.1 84401 1wb9A 800 27.31 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1xrjA 261 27.92 c.37.1.6 122256 1pvdA 537 29.98 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1n4aA 252 30.35 c.92.2.2 85317 1f1xA 322 31.58 d.32.1.3,d.32.1.3 83208,83209 1j8mF 297 32.23 a.24.13.1,c.37.1.10 62742,62743 2higA 487 32.66 1amk 251 33.56 1nsf 273 33.74 1u1jA 765 34.30 c.1.22.2,c.1.22.2 107590,107591 1zm7A 230 34.67 2rhmA 193 35.31 2ff7A 247 37.19 c.37.1.12 133377 1gl6A 436 37.95 c.37.1.11 70259 2ixeA 271 38.74 2qgnA 322 38.92 1ll7A 392 39.38 c.1.8.5,d.26.3.1 78085,78086 2b8wA 328 39.81 1p5zB 263 39.87 c.37.1.1 87815 2fncA 381 40.52 2gxaA 274 40.70 2z06A 252 41.64 1xjcA 169 41.73 c.37.1.10 115387 1g6oA 330 41.82 c.37.1.11 32430 3cbwA 353 44.80 1zj6A 187 45.20 c.37.1.8 125145 1kagA 173 46.45 c.37.1.2 72249 2gzaA 361 46.48 2uvfA 608 46.84 2olnA 397 47.51 1pydA 556 48.97 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2i6lA 320 49.49 1sflA 238 49.53 c.1.10.1 112077 2plrA 213 50.46 2j41A 207 51.80 1m6jA 261 51.88 c.1.1.1 78693 1h1nA 305 53.10 c.1.8.3 70855 1n2zA 245 53.45 c.92.2.2 79865 2dxnA 274 54.03 2f1rA 171 54.84 1phpA 394 55.21 c.86.1.1 35452 1odfA 290 56.33 c.37.1.6 92782 1x38A 602 56.72 c.1.8.7,c.23.11.1 121655,121656 1in6A 334 58.00 a.4.5.11,c.37.1.20 62601,62602 1i45A 248 58.31 c.1.1.1 61665 3tmkA 216 58.72 c.37.1.1 31920 1w7jA 795 58.76 b.34.3.1,c.37.1.9 120688,120689 1htwA 158 58.96 c.37.1.18 71083 2fh1A 344 59.02 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 7timA 247 59.79 c.1.1.1 28457 1yo6A 250 62.31 c.2.1.2 123769 1zinA 217 63.25 c.37.1.1,g.41.2.1 31915,45178 2pt7A 330 63.76 1ozhA 566 63.81 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2pmkA 243 63.97 1btmA 252 65.05 c.1.1.1 28513 1omp 370 65.29 1in4A 334 65.46 a.4.5.11,c.37.1.20 62597,62598 2qddA 378 65.46 1nf2A 268 65.50 c.108.1.10 91849 1dseA 292 66.00 a.93.1.1 59130 1gg4A 452 66.38 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1n55A 251 67.00 c.1.1.1 80007 1h1dA 221 67.08 c.66.1.1 83452 1qhxA 178 67.42 c.37.1.3 31936 1j9yA 385 67.66 c.1.8.3 62791 1f1uA 323 68.38 d.32.1.3,d.32.1.3 83200,83201 2yw2A 424 69.09 1l8qA 324 70.47 a.4.12.2,c.37.1.20 77809,77810 2j5wA 1065 70.54 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 2bdtA 189 71.24 c.37.1.25 128344 2eyuA 261 75.10 3pfk 319 75.26 1qhsA 178 75.28 c.37.1.3 31938 2ocgA 254 76.93 1edqA 540 79.83 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1edgA 380 80.52 c.1.8.3 28807 1j8yF 297 81.08 a.24.13.1,c.37.1.10 62747,62748 1h5vA 304 82.46 c.1.8.3 70898 1y63A 184 82.57 c.37.1.1 116494 1qpbA 563 83.18 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1esmA 316 83.80 c.37.1.6 31953 1viaA 175 86.49 c.37.1.2 100754 1ydnA 295 86.76 1d2nA 272 87.34 c.37.1.20 32428 2d2jA 329 87.63 c.1.9.3 131175 2h0rA 216 88.37 1eh9A 558 88.68 b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1anfA 370 88.75 c.94.1.1 35776 2axtC 473 88.98 2nxwA 565 89.00 3b9pA 297 89.18