# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.3747 1e4yA 214 0.4686 c.37.1.1,g.41.2.1 31901,45181 2qm8A 337 0.5475 1rz3A 201 0.5699 c.37.1.6 98132 2ak3A 226 0.5763 c.37.1.1,g.41.2.1 31892,45193 2p5tB 253 0.8518 1in4A 334 0.8618 a.4.5.11,c.37.1.20 62597,62598 1p3jA 217 0.8695 c.37.1.1,g.41.2.1 94022,94023 2p67A 341 0.8962 2pezA 179 0.997 2pbrA 195 1.118 2ax4A 198 1.138 1nn5A 215 1.141 c.37.1.1 85892 1gtvA 214 1.417 c.37.1.1 70537 1qf9A 194 1.518 c.37.1.1 31848 1zin 217 1.545 2ccjA 205 1.806 1ukzA 203 2.161 c.37.1.1 31840 2vp4A 230 2.535 1s4qA 228 2.745 c.37.1.1 98507 1p9rA 418 2.896 c.37.1.11 94399 1yrbA 262 3.018 c.37.1.10 123915 1ukz 203 3.090 1uj2A 252 3.128 c.37.1.6 99452 1akeA 214 3.180 c.37.1.1,g.41.2.1 31905,45185 1vmaA 306 3.203 a.24.13.1,c.37.1.10 108887,108888 1akyA 220 3.502 c.37.1.1,g.41.2.1 31896,45197 2cdnA 201 3.771 c.37.1.1 130289 1ex7A 186 4.091 c.37.1.1 59537 1nrjB 218 4.120 c.37.1.8 86125 2yvuA 186 4.464 1gky 187 4.541 1s96A 219 4.796 c.37.1.1 98740 2an9A 207 4.902 c.37.1.1 127037 1z8fA 228 5.350 2gzaA 361 5.388 1fj2A 232 5.390 c.69.1.14 34720 2c95A 196 5.926 1oe0A 230 6.476 c.37.1.1 92788 1in6A 334 6.499 a.4.5.11,c.37.1.20 62601,62602 1khtA 192 6.606 c.37.1.1 84401 1h65A 270 6.806 c.37.1.8 65640 3be4A 217 7.219 1xjcA 169 8.468 c.37.1.10 115387 1np6A 174 8.507 c.37.1.10 85954 1e9eA 215 8.998 c.37.1.1 64810 1ak2A 233 9.114 c.37.1.1,g.41.2.1 31894,45195 2qt1A 207 9.559 2b8wA 328 9.727 5tmpA 213 9.836 c.37.1.1 31931 1rkbA 173 10.07 c.37.1.1 111854 2eu8A 216 10.16 1znwA 207 10.43 c.37.1.1 125412 1pydA 556 10.49 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3b9qA 302 10.60 2qy9A 309 10.68 1lv7A 257 11.15 c.37.1.20 78232 2f1rA 171 12.15 4tmkA 213 12.19 c.37.1.1 31930 2g1iA 563 12.43 2bwjA 199 12.67 2qorA 204 12.72 3tmkA 216 13.01 c.37.1.1 31920 1z6gA 218 13.45 1tq6A 413 13.57 c.37.1.8 107202 1xrjA 261 14.09 c.37.1.6 122256 2ff7A 247 14.23 c.37.1.12 133377 1zm7A 230 14.29 1g6oA 330 14.92 c.37.1.11 32430 2cbzA 237 15.32 1nksA 194 15.43 c.37.1.1 31886 1qhxA 178 15.53 c.37.1.3 31936 2axpA 173 15.60 c.37.1.1 127497 1qpbA 563 15.76 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1kagA 173 16.84 c.37.1.2 72249 2q8pA 260 17.79 1yq2A 1024 17.90 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1zu4A 320 18.00 1x6vA 630 18.08 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1n2zA 245 19.04 c.92.2.2 79865 2ixeA 271 19.66 1n4aA 252 19.79 c.92.2.2 85317 1pvdA 537 20.91 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2oap1 511 22.56 1sq5A 308 23.00 c.37.1.6 105882 2dri 271 23.68 2rhmA 193 24.16 1n55A 251 25.70 c.1.1.1 80007 1ye8A 178 26.10 c.37.1.11 123010 1p5zB 263 26.15 c.37.1.1 87815 1odfA 290 26.24 c.37.1.6 92782 1qhsA 178 26.33 c.37.1.3 31938 2pmkA 243 26.53 2hu5A 582 26.59 b.69.7.2,c.69.1.33 136763,136764 2og2A 359 26.60 2bdtA 189 26.68 c.37.1.25 128344 1zpdA 568 26.85 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1zinA 217 26.88 c.37.1.1,g.41.2.1 31915,45178 1q6zA 528 27.68 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1e9rA 437 27.77 c.37.1.11 64827 1h1nA 305 28.09 c.1.8.3 70855 1j8mF 297 28.21 a.24.13.1,c.37.1.10 62742,62743 2pgd 482 28.29 2eyuA 261 29.93 1htwA 158 30.24 c.37.1.18 71083 3c8uA 208 31.51 1e1dA 553 31.62 e.26.1.1 43363 2ga8A 359 32.41 1hqcA 324 32.75 a.4.5.11,c.37.1.20 16127,32424 1kdoA 227 32.82 c.37.1.1 68478 2q3fA 181 33.61 1auoA 218 35.11 c.69.1.14 34716 2j41A 207 36.85 2plrA 213 37.33 2higA 487 37.43 2h8lA 252 37.58 2fh5B 214 38.40 c.37.1.8 133478 1hdiA 413 38.43 c.86.1.1 60964 1e32A 458 38.73 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1ckeA 227 39.56 c.37.1.1 31846 3cbwA 353 42.96 1y63A 184 43.97 c.37.1.1 116494 1i45A 248 44.53 c.1.1.1 61665 1gz0A 253 44.60 c.116.1.1,d.79.3.3 76391,76392 2ihtA 573 45.68 1gntA 553 49.58 e.26.1.1 70290 2px0A 296 50.34 1ylhA 560 50.65 1s8eA 333 51.17 d.159.1.4 105368 1mnaA 298 52.68 c.69.1.22 79322 2hdwA 367 52.92 1viaA 175 54.30 c.37.1.2 100754 2pt7A 330 55.03 1hvyA 288 56.40 d.117.1.1 41049 1xp3A 307 57.36 c.1.15.1 122210 7timA 247 58.84 c.1.1.1 28457 2qw5A 335 59.13 1qumA 285 59.79 c.1.15.1 29393 1zj6A 187 59.91 c.37.1.8 125145 2atvA 196 60.95 c.37.1.8 127308 1m6jA 261 61.02 c.1.1.1 78693 1r2rA 248 61.05 c.1.1.1 96875 2fnaA 357 61.47 a.4.5.11,c.37.1.20 133809,133810 2ex4A 241 61.93 c.66.1.42 132516 2nxwA 565 62.09 2rgxA 206 63.27 1ly1A 181 63.46 c.37.1.1 74334 2tscA 264 65.33 d.117.1.1 40952 1m7gA 211 65.82 c.37.1.4 78724 1tph1 247 66.19 2dp3A 257 66.30 2g8mA 264 67.63 1h1dA 221 67.84 c.66.1.1 83452 3b9pA 297 67.93 1bkpA 278 68.38 d.117.1.1 41029 1jr3A 373 69.09 a.80.1.1,c.37.1.20 63245,63246 1njgA 250 69.86 c.37.1.20 85785 1qtwA 285 70.48 c.1.15.1 29392 2hf9A 226 70.96 1of8A 370 71.70 c.1.10.4 92819 2pblA 262 72.70 3bdvA 191 73.18 2c31A 568 74.20 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1amk 251 74.34 2olrA 540 74.50 c.91.1.1,c.109.1.1 139140,139141 2cxxA 190 74.51 c.37.1.8 131013 1bif 469 76.60 2bjkA 516 76.94 2g8oA 264 79.47 d.117.1.1 134779 1xmiA 291 82.54 c.37.1.12 115489 2d2eA 250 83.83 1evfA 264 86.42 d.117.1.1 40932 1r0wA 286 87.51 c.37.1.12 96754 1qqqA 264 87.95 d.117.1.1 40931 1phpA 394 88.32 c.86.1.1 35452 1vg8A 207 88.46 c.37.1.8 108606 1ofhA 310 88.46 c.37.1.20 86948 1ypvA 313 88.61 2r8bA 251 89.01