# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e4yA 214 0.5065 c.37.1.1,g.41.2.1 31901,45181 2qm8A 337 0.5075 2z0hA 197 0.5987 2p67A 341 0.6057 2ak3A 226 0.9839 c.37.1.1,g.41.2.1 31892,45193 2ccjA 205 1.548 1akeA 214 1.659 c.37.1.1,g.41.2.1 31905,45185 1p3jA 217 1.858 c.37.1.1,g.41.2.1 94022,94023 1ukzA 203 1.986 c.37.1.1 31840 2pbrA 195 2.246 2cdnA 201 2.501 c.37.1.1 130289 1rz3A 201 2.863 c.37.1.6 98132 2vp4A 230 2.888 2ax4A 198 3.081 1fj2A 232 3.523 c.69.1.14 34720 1s4qA 228 3.964 c.37.1.1 98507 1gtvA 214 4.652 c.37.1.1 70537 1ukz 203 4.913 1qf9A 194 4.987 c.37.1.1 31848 2p5tB 253 5.003 1akyA 220 5.006 c.37.1.1,g.41.2.1 31896,45197 1z8fA 228 5.491 1zm7A 230 5.674 1zin 217 5.972 1nn5A 215 6.225 c.37.1.1 85892 1h1nA 305 6.847 c.1.8.3 70855 1in4A 334 6.991 a.4.5.11,c.37.1.20 62597,62598 2c95A 196 7.498 1oe0A 230 8.219 c.37.1.1 92788 1s96A 219 8.286 c.37.1.1 98740 1khtA 192 8.395 c.37.1.1 84401 1yq2A 1024 8.536 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1vmaA 306 8.565 a.24.13.1,c.37.1.10 108887,108888 1nrjB 218 9.410 c.37.1.8 86125 1rkbA 173 9.423 c.37.1.1 111854 1p9rA 418 9.582 c.37.1.11 94399 1yrbA 262 9.700 c.37.1.10 123915 1gky 187 10.27 2f1rA 171 10.40 1ex7A 186 11.19 c.37.1.1 59537 1nksA 194 12.42 c.37.1.1 31886 1uj2A 252 13.30 c.37.1.6 99452 3be4A 217 13.68 1xjcA 169 14.63 c.37.1.10 115387 2an9A 207 15.06 c.37.1.1 127037 1ak2A 233 15.09 c.37.1.1,g.41.2.1 31894,45195 2pezA 179 15.61 4tmkA 213 16.12 c.37.1.1 31930 5tmpA 213 16.23 c.37.1.1 31931 1znwA 207 17.24 c.37.1.1 125412 1z6gA 218 19.70 2axpA 173 21.62 c.37.1.1 127497 1odfA 290 21.85 c.37.1.6 92782 2eu8A 216 22.79 1lv7A 257 22.92 c.37.1.20 78232 1zu4A 320 23.60 1zj6A 187 23.67 c.37.1.8 125145 2b8wA 328 24.40 2gzaA 361 25.28 1e9eA 215 26.23 c.37.1.1 64810 2g1iA 563 26.45 1tq6A 413 28.18 c.37.1.8 107202 1h65A 270 29.48 c.37.1.8 65640 1s8eA 333 29.89 d.159.1.4 105368 1htwA 158 30.22 c.37.1.18 71083 3c8uA 208 33.06 2qorA 204 33.55 1hqcA 324 33.79 a.4.5.11,c.37.1.20 16127,32424 1in6A 334 33.88 a.4.5.11,c.37.1.20 62601,62602 1j8mF 297 35.00 a.24.13.1,c.37.1.10 62742,62743 2q3fA 181 38.70 1y63A 184 41.03 c.37.1.1 116494 1x6vA 630 41.18 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1n55A 251 41.73 c.1.1.1 80007 2qt1A 207 42.06 1i45A 248 43.72 c.1.1.1 61665 1np6A 174 44.22 c.37.1.10 85954 7timA 247 44.66 c.1.1.1 28457 1vg8A 207 44.75 c.37.1.8 108606 1xwiA 322 45.01 2q8pA 260 46.36 1nsf 273 46.90 2hu5A 582 47.52 b.69.7.2,c.69.1.33 136763,136764 2ff7A 247 48.80 c.37.1.12 133377 2px0A 296 49.53 2bwjA 199 51.55 1fl9A 161 52.01 c.37.1.18 70137 1ofhA 310 54.73 c.37.1.20 86948 1zinA 217 55.01 c.37.1.1,g.41.2.1 31915,45178 1gz0A 253 55.15 c.116.1.1,d.79.3.3 76391,76392 2cbzA 237 55.23 2ixeA 271 55.81 2pblA 262 56.30 2yvuA 186 56.45 2eyuA 261 56.85 1sq5A 308 57.04 c.37.1.6 105882 3tmkA 216 57.57 c.37.1.1 31920 3cbwA 353 57.79 1o3yA 166 58.96 c.37.1.8 86618 1kagA 173 58.96 c.37.1.2 72249 2atvA 196 59.15 c.37.1.8 127308 1e9rA 437 60.19 c.37.1.11 64827 1p5zB 263 60.56 c.37.1.1 87815 1p9bA 442 62.53 c.37.1.10 94385 2h8lA 252 62.76 2fh5B 214 63.14 c.37.1.8 133478 2h17A 181 63.43 1tph1 247 65.64 2plrA 213 65.73 2pmkA 243 67.94 1jr3A 373 70.24 a.80.1.1,c.37.1.20 63245,63246 1ctqA 166 72.85 c.37.1.8 31965 1zbsA 291 74.04 c.55.1.5,c.55.1.5 124870,124871 3b9qA 302 74.70 1xrjA 261 76.50 c.37.1.6 122256 1btmA 252 78.73 c.1.1.1 28513 1r2rA 248 79.50 c.1.1.1 96875 1qhsA 178 79.51 c.37.1.3 31938 1yr2A 741 79.63 1ye8A 178 79.82 c.37.1.11 123010 3bdvA 191 80.72 2g8oA 264 80.79 d.117.1.1 134779 1b02A 279 81.00 d.117.1.1 41035 2rhmA 193 81.35 1m6jA 261 82.97 c.1.1.1 78693 1kdoA 227 83.54 c.37.1.1 68478 1ylhA 560 84.95 1xmiA 291 87.69 c.37.1.12 115489 1yduA 170 88.01 b.162.1.1 123003 2g8mA 264 88.62