# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.1334 1e4yA 214 0.2313 c.37.1.1,g.41.2.1 31901,45181 2p67A 341 0.4050 1gtvA 214 0.4079 c.37.1.1 70537 2ccjA 205 0.4447 2pbrA 195 0.4933 2qm8A 337 0.6219 2ak3A 226 0.7185 c.37.1.1,g.41.2.1 31892,45193 1rz3A 201 0.8072 c.37.1.6 98132 2p5tB 253 0.9087 2ax4A 198 1.168 2cdnA 201 1.288 c.37.1.1 130289 1akeA 214 1.297 c.37.1.1,g.41.2.1 31905,45185 1nn5A 215 1.373 c.37.1.1 85892 2vp4A 230 1.411 2pezA 179 1.652 1p3jA 217 1.693 c.37.1.1,g.41.2.1 94022,94023 1oe0A 230 2.039 c.37.1.1 92788 1qf9A 194 2.277 c.37.1.1 31848 1zm7A 230 2.436 1s4qA 228 2.458 c.37.1.1 98507 1in4A 334 2.813 a.4.5.11,c.37.1.20 62597,62598 1z8fA 228 3.014 1ukzA 203 3.253 c.37.1.1 31840 2c95A 196 3.309 1s96A 219 3.447 c.37.1.1 98740 2f1rA 171 3.588 1khtA 192 3.796 c.37.1.1 84401 1vmaA 306 4.041 a.24.13.1,c.37.1.10 108887,108888 1ukz 203 4.074 1e9eA 215 4.950 c.37.1.1 64810 1xjcA 169 5.125 c.37.1.10 115387 1p9rA 418 5.212 c.37.1.11 94399 1zin 217 5.300 1gky 187 5.948 1rkbA 173 6.107 c.37.1.1 111854 1fj2A 232 6.232 c.69.1.14 34720 5tmpA 213 6.251 c.37.1.1 31931 1ex7A 186 6.605 c.37.1.1 59537 1znwA 207 6.616 c.37.1.1 125412 2an9A 207 7.023 c.37.1.1 127037 1nksA 194 7.106 c.37.1.1 31886 1z6gA 218 7.754 1uj2A 252 7.987 c.37.1.6 99452 3tmkA 216 8.166 c.37.1.1 31920 4tmkA 213 8.191 c.37.1.1 31930 1nrjB 218 8.335 c.37.1.8 86125 1yrbA 262 8.569 c.37.1.10 123915 2gzaA 361 8.636 2qt1A 207 8.968 1h1nA 305 9.171 c.1.8.3 70855 1akyA 220 9.497 c.37.1.1,g.41.2.1 31896,45197 1h65A 270 9.97 c.37.1.8 65640 1np6A 174 11.28 c.37.1.10 85954 1odfA 290 11.54 c.37.1.6 92782 1zj6A 187 12.63 c.37.1.8 125145 2ff7A 247 12.97 c.37.1.12 133377 2yvuA 186 13.37 2cbzA 237 15.03 2eu8A 216 17.54 2q8pA 260 17.69 2qorA 204 18.11 1p5zB 263 18.41 c.37.1.1 87815 1sq5A 308 18.45 c.37.1.6 105882 2px0A 296 19.13 2ixeA 271 20.88 1lv7A 257 20.96 c.37.1.20 78232 1e9rA 437 23.15 c.37.1.11 64827 1zu4A 320 24.24 2b8wA 328 24.40 1xrjA 261 24.41 c.37.1.6 122256 1o3yA 166 24.72 c.37.1.8 86618 3b9qA 302 24.81 2rhmA 193 25.13 1tq6A 413 25.65 c.37.1.8 107202 1x6vA 630 25.92 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pgd 482 26.07 2bwjA 199 26.33 1njgA 250 26.36 c.37.1.20 85785 1n4aA 252 26.98 c.92.2.2 85317 2plrA 213 27.20 2fh5B 214 27.23 c.37.1.8 133478 2pmkA 243 27.28 1ak2A 233 27.84 c.37.1.1,g.41.2.1 31894,45195 1n2zA 245 28.75 c.92.2.2 79865 1y63A 184 29.84 c.37.1.1 116494 2axpA 173 31.05 c.37.1.1 127497 1htwA 158 31.75 c.37.1.18 71083 2q3fA 181 31.88 1kagA 173 32.17 c.37.1.2 72249 1esmA 316 32.35 c.37.1.6 31953 1ckeA 227 32.44 c.37.1.1 31846 1gz0A 253 33.39 c.116.1.1,d.79.3.3 76391,76392 1j8mF 297 33.61 a.24.13.1,c.37.1.10 62742,62743 1nsf 273 33.71 1in6A 334 34.10 a.4.5.11,c.37.1.20 62601,62602 1kdoA 227 34.38 c.37.1.1 68478 2h17A 181 36.80 2eyuA 261 37.40 2g8oA 264 37.65 d.117.1.1 134779 3c8uA 208 38.46 1e32A 458 39.46 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2g1iA 563 40.00 2g8mA 264 40.29 1n55A 251 40.42 c.1.1.1 80007 1ltqA 301 42.35 c.108.1.9,c.37.1.1 78208,78209 2oap1 511 42.65 1qhsA 178 43.00 c.37.1.3 31938 2ga8A 359 43.52 1fl9A 161 44.03 c.37.1.18 70137 3b9pA 297 45.43 2og2A 359 47.36 1qhxA 178 47.48 c.37.1.3 31936 2avdA 219 47.69 c.66.1.1 127377 1yq2A 1024 48.38 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1jr3A 373 48.50 a.80.1.1,c.37.1.20 63245,63246 1hvyA 288 48.96 d.117.1.1 41049 1g6oA 330 48.97 c.37.1.11 32430 2hu5A 582 49.61 b.69.7.2,c.69.1.33 136763,136764 1m7gA 211 50.70 c.37.1.4 78724 3be4A 217 51.34 2bdtA 189 56.44 c.37.1.25 128344 1viaA 175 56.49 c.37.1.2 100754 1yuwA 554 57.02 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1hqcA 324 57.98 a.4.5.11,c.37.1.20 16127,32424 1q6zA 528 58.51 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2hf9A 226 59.91 1xewX 182 59.95 c.37.1.12 115235 2qy9A 309 61.04 7timA 247 62.07 c.1.1.1 28457 1edgA 380 62.41 c.1.8.3 28807 1qqqA 264 62.53 d.117.1.1 40931 1jb9A 316 62.60 b.43.4.2,c.25.1.1 62840,62841 1ev5A 264 62.68 d.117.1.1 40935 1ye8A 178 62.76 c.37.1.11 123010 2tscA 264 62.88 d.117.1.1 40952 1evfA 264 67.66 d.117.1.1 40932 3bdvA 191 69.08 1ji0A 240 70.01 c.37.1.12 71665 1i45A 248 72.27 c.1.1.1 61665 2pt7A 330 72.70 2p32A 120 73.14 2pblA 262 73.55 1tph1 247 74.31 1uxoA 192 74.40 c.69.1.31 108121 1e58A 249 74.53 c.60.1.1 59262 1edg 380 74.94 1efdN 266 75.51 c.92.2.1 35597 1qhfA 240 76.90 c.60.1.1 33960 1bkpA 278 77.30 d.117.1.1 41029 1r0wA 286 78.24 c.37.1.12 96754 1zinA 217 79.01 c.37.1.1,g.41.2.1 31915,45178 1r2rA 248 79.16 c.1.1.1 96875 1ly1A 181 80.34 c.37.1.1 74334 1g6hA 257 80.62 c.37.1.12 60318 1gvnB 287 80.79 c.37.1.21 76354 1ctqA 166 81.39 c.37.1.8 31965 1xmiA 291 82.95 c.37.1.12 115489 1b02A 279 83.14 d.117.1.1 41035 2f7tA 227 83.48 2higA 487 84.54 2h8lA 252 85.20 2grjA 192 85.35 1axeA 374 86.78 b.35.1.2,c.2.1.1 24681,29697 3cbwA 353 87.71 2ihtA 573 88.57 1f2tA 149 89.29 c.37.1.12 32373