# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z0hA 197 0.2422 1e4yA 214 0.3153 c.37.1.1,g.41.2.1 31901,45181 2p67A 341 0.3459 2qm8A 337 0.4391 2ccjA 205 0.6202 2ak3A 226 0.8044 c.37.1.1,g.41.2.1 31892,45193 2pbrA 195 0.8291 2vp4A 230 0.8648 1rz3A 201 0.8708 c.37.1.6 98132 1gtvA 214 0.9380 c.37.1.1 70537 2ax4A 198 0.9713 2p5tB 253 1.457 1akeA 214 1.693 c.37.1.1,g.41.2.1 31905,45185 1p3jA 217 2.014 c.37.1.1,g.41.2.1 94022,94023 1ukzA 203 2.025 c.37.1.1 31840 1in4A 334 2.043 a.4.5.11,c.37.1.20 62597,62598 1zin 217 2.087 2cdnA 201 2.145 c.37.1.1 130289 1s4qA 228 2.195 c.37.1.1 98507 2pezA 179 2.242 1nn5A 215 2.262 c.37.1.1 85892 1s96A 219 2.583 c.37.1.1 98740 1khtA 192 2.669 c.37.1.1 84401 1qf9A 194 2.950 c.37.1.1 31848 1akyA 220 3.034 c.37.1.1,g.41.2.1 31896,45197 1ukz 203 3.241 1zm7A 230 4.159 1fj2A 232 4.599 c.69.1.14 34720 1oe0A 230 4.617 c.37.1.1 92788 1nrjB 218 4.685 c.37.1.8 86125 1z8fA 228 4.943 2f1rA 171 4.974 2c95A 196 5.104 2an9A 207 5.282 c.37.1.1 127037 1vmaA 306 5.800 a.24.13.1,c.37.1.10 108887,108888 1znwA 207 5.814 c.37.1.1 125412 1xjcA 169 6.054 c.37.1.10 115387 1yrbA 262 6.068 c.37.1.10 123915 1gky 187 6.099 1p9rA 418 6.435 c.37.1.11 94399 1ex7A 186 6.904 c.37.1.1 59537 1h65A 270 7.092 c.37.1.8 65640 2gzaA 361 7.173 1nksA 194 7.325 c.37.1.1 31886 2qt1A 207 7.444 1rkbA 173 7.510 c.37.1.1 111854 1h1nA 305 8.094 c.1.8.3 70855 2eu8A 216 8.122 1uj2A 252 9.041 c.37.1.6 99452 4tmkA 213 9.134 c.37.1.1 31930 5tmpA 213 9.161 c.37.1.1 31931 1x6vA 630 9.674 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1odfA 290 10.74 c.37.1.6 92782 2cbzA 237 10.88 2ff7A 247 11.61 c.37.1.12 133377 1lv7A 257 12.63 c.37.1.20 78232 1z6gA 218 13.32 3be4A 217 13.60 1np6A 174 14.11 c.37.1.10 85954 2yvuA 186 14.30 1yq2A 1024 14.44 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2q8pA 260 14.64 1e9rA 437 16.03 c.37.1.11 64827 1tq6A 413 16.95 c.37.1.8 107202 2bwjA 199 17.22 1nsf 273 17.28 2axpA 173 17.36 c.37.1.1 127497 1e9eA 215 17.68 c.37.1.1 64810 1zj6A 187 18.34 c.37.1.8 125145 1zu4A 320 18.52 2pmkA 243 18.71 2q3fA 181 19.13 1htwA 158 19.86 c.37.1.18 71083 1p5zB 263 19.91 c.37.1.1 87815 2ixeA 271 20.37 3tmkA 216 21.04 c.37.1.1 31920 1gz0A 253 21.47 c.116.1.1,d.79.3.3 76391,76392 1hqcA 324 22.69 a.4.5.11,c.37.1.20 16127,32424 1sq5A 308 23.33 c.37.1.6 105882 1n4aA 252 23.74 c.92.2.2 85317 1xrjA 261 23.91 c.37.1.6 122256 2qorA 204 24.12 2plrA 213 24.84 1s8eA 333 25.79 d.159.1.4 105368 2g1iA 563 25.99 2rhmA 193 26.67 1n2zA 245 30.59 c.92.2.2 79865 1ckeA 227 31.11 c.37.1.1 31846 1j8mF 297 31.79 a.24.13.1,c.37.1.10 62742,62743 1y63A 184 32.20 c.37.1.1 116494 1in6A 334 32.41 a.4.5.11,c.37.1.20 62601,62602 3c8uA 208 33.79 2fh5B 214 34.51 c.37.1.8 133478 1njgA 250 34.64 c.37.1.20 85785 1fl9A 161 34.94 c.37.1.18 70137 1n55A 251 35.15 c.1.1.1 80007 1g6oA 330 35.81 c.37.1.11 32430 1kagA 173 35.82 c.37.1.2 72249 2oap1 511 36.09 1ltqA 301 37.15 c.108.1.9,c.37.1.1 78208,78209 1qhsA 178 38.79 c.37.1.3 31938 1h1dA 221 41.33 c.66.1.1 83452 2eyuA 261 41.63 2px0A 296 42.33 1jb9A 316 43.79 b.43.4.2,c.25.1.1 62840,62841 1ak2A 233 44.53 c.37.1.1,g.41.2.1 31894,45195 2hu5A 582 45.25 b.69.7.2,c.69.1.33 136763,136764 1kdoA 227 47.37 c.37.1.1 68478 3cbwA 353 47.64 1ylhA 560 48.13 2g8oA 264 48.78 d.117.1.1 134779 3b9qA 302 49.10 1pydA 556 49.26 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2g8mA 264 50.21 1jr3A 373 51.36 a.80.1.1,c.37.1.20 63245,63246 1qpbA 563 51.98 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1e32A 458 52.11 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1i45A 248 52.37 c.1.1.1 61665 1q6zA 528 52.65 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 7timA 247 54.62 c.1.1.1 28457 1tph1 247 54.93 2og2A 359 55.57 1esmA 316 55.62 c.37.1.6 31953 2pblA 262 55.84 1d2nA 272 57.34 c.37.1.20 32428 3bdvA 191 57.93 1m7gA 211 58.78 c.37.1.4 78724 1r2rA 248 58.93 c.1.1.1 96875 1hvyA 288 59.01 d.117.1.1 41049 1r0wA 286 59.07 c.37.1.12 96754 2bdtA 189 59.37 c.37.1.25 128344 1xmiA 291 59.57 c.37.1.12 115489 1o3yA 166 59.69 c.37.1.8 86618 2pt7A 330 62.89 1yuwA 554 63.11 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1f2tA 149 63.11 c.37.1.12 32373 1ji0A 240 63.31 c.37.1.12 71665 1xewX 182 63.43 c.37.1.12 115235 1auoA 218 68.13 c.69.1.14 34716 1b02A 279 68.35 d.117.1.1 41035 1ye8A 178 69.12 c.37.1.11 123010 1m6jA 261 69.39 c.1.1.1 78693 1g6hA 257 69.92 c.37.1.12 60318 2pgd 482 70.89 1r6dA 337 72.07 c.2.1.2 97148 2j41A 207 72.84 2avdA 219 75.45 c.66.1.1 127377 1bkpA 278 75.67 d.117.1.1 41029 1qhxA 178 76.00 c.37.1.3 31936 1zinA 217 77.10 c.37.1.1,g.41.2.1 31915,45178 2fnaA 357 77.41 a.4.5.11,c.37.1.20 133809,133810 2b8wA 328 77.60 2tscA 264 79.56 d.117.1.1 40952 2rgxA 206 80.37 2pzeA 229 81.74 2h8lA 252 82.33 1jj7A 260 83.66 c.37.1.12 63114 2f2eA 146 85.86 a.4.5.69 132808 1xwiA 322 85.88 1ctqA 166 88.00 c.37.1.8 31965 2dp3A 257 89.85