# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s4qA 228 0.5804 c.37.1.1 98507 1rkbA 173 0.6556 c.37.1.1 111854 1z8fA 228 1.242 2rhmA 193 1.370 1y63A 184 1.372 c.37.1.1 116494 1rz3A 201 1.708 c.37.1.6 98132 2z0hA 197 2.552 1znwA 207 2.666 c.37.1.1 125412 1in4A 334 4.517 a.4.5.11,c.37.1.20 62597,62598 2ax4A 198 4.618 1vmaA 306 4.703 a.24.13.1,c.37.1.10 108887,108888 1fj2A 232 4.741 c.69.1.14 34720 1kagA 173 4.779 c.37.1.2 72249 1zin 217 6.047 2qorA 204 6.055 2bwjA 199 6.642 2axpA 173 7.592 c.37.1.1 127497 1khtA 192 7.603 c.37.1.1 84401 1nn5A 215 7.746 c.37.1.1 85892 1s96A 219 8.387 c.37.1.1 98740 2pezA 179 8.451 2ak3A 226 8.678 c.37.1.1,g.41.2.1 31892,45193 1gky 187 9.941 2ccjA 205 10.46 1uj2A 252 10.59 c.37.1.6 99452 1ukz 203 11.00 1ex7A 186 11.53 c.37.1.1 59537 1h65A 270 11.53 c.37.1.8 65640 2c95A 196 13.77 1n3bA 216 13.79 c.37.1.1 79959 2yvuA 186 13.92 1gtvA 214 14.31 c.37.1.1 70537 1ak2A 233 15.08 c.37.1.1,g.41.2.1 31894,45195 3c8uA 208 15.88 1hqcA 324 15.99 a.4.5.11,c.37.1.20 16127,32424 1knqA 175 18.17 c.37.1.17 72786 1oe0A 230 18.23 c.37.1.1 92788 2og2A 359 18.48 1in6A 334 18.62 a.4.5.11,c.37.1.20 62601,62602 1xjcA 169 18.96 c.37.1.10 115387 1s8eA 333 20.24 d.159.1.4 105368 2vp4A 230 20.99 3b9qA 302 21.04 2pbrA 195 21.11 1mnaA 298 21.42 c.69.1.22 79322 2an9A 207 22.03 c.37.1.1 127037 2qt1A 207 23.35 1e9eA 215 23.45 c.37.1.1 64810 1z6gA 218 24.10 1np6A 174 24.50 c.37.1.10 85954 1qf9A 194 24.65 c.37.1.1 31848 2q3fA 181 24.89 1e4yA 214 25.81 c.37.1.1,g.41.2.1 31901,45181 1gvnB 287 26.05 c.37.1.21 76354 4tmkA 213 26.46 c.37.1.1 31930 2r8bA 251 28.54 1nf2A 268 29.58 c.108.1.10 91849 1pydA 556 30.54 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2p67A 341 30.61 1kngA 156 32.05 c.47.1.10 72777 1kezA 300 32.51 c.69.1.22 68546 1x6vA 630 33.43 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1lv7A 257 33.65 c.37.1.20 78232 1kgdA 180 34.55 c.37.1.1 68582 2px0A 296 35.33 2plrA 213 35.77 2qy9A 309 36.29 5tmpA 213 36.54 c.37.1.1 31931 2g1iA 563 37.87 1zu4A 320 37.95 1zd8A 227 37.97 2q1zA 184 39.04 2feaA 236 39.59 c.108.1.20 133327 1zj6A 187 39.74 c.37.1.8 125145 1auoA 218 40.46 c.69.1.14 34716 1tq6A 413 41.00 c.37.1.8 107202 2f1rA 171 41.41 2ff7A 247 41.59 c.37.1.12 133377 1qpbA 563 42.15 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1zm7A 230 42.36 1odfA 290 43.16 c.37.1.6 92782 2ga8A 359 43.20 1gz0A 253 44.04 c.116.1.1,d.79.3.3 76391,76392 1p5zB 263 44.81 c.37.1.1 87815 1efdN 266 46.25 c.92.2.1 35597 2gsqA 202 48.94 a.45.1.1,c.47.1.5 17715,33009 1nsf 273 49.94 2j41A 207 52.51 2i6dA 257 52.64 1x7oA 287 52.88 1zinA 217 53.12 c.37.1.1,g.41.2.1 31915,45178 2pt5A 168 53.77 1h1nA 305 53.88 c.1.8.3 70855 1p9rA 418 54.02 c.37.1.11 94399 2bdtA 189 54.38 c.37.1.25 128344 2pmkA 243 54.88 1ceo 343 56.36 1r0wA 286 56.61 c.37.1.12 96754 1ukzA 203 57.72 c.37.1.1 31840 2cdnA 201 58.22 c.37.1.1 130289 1nrjB 218 58.38 c.37.1.8 86125 1eqcA 394 58.40 c.1.8.3 28811 1esmA 316 59.41 c.37.1.6 31953 1d2nA 272 59.70 c.37.1.20 32428 1c9kB 180 60.04 c.37.1.11 32364 3bdvA 191 61.46 1e9gA 286 61.51 b.40.5.1 59393 2cxxA 190 62.49 c.37.1.8 131013 1xvlA 321 63.66 c.92.2.2 122380 1htwA 158 64.60 c.37.1.18 71083 2cbzA 237 64.92 1xrjA 261 65.68 c.37.1.6 122256 1akyA 220 67.46 c.37.1.1,g.41.2.1 31896,45197 3tmkA 216 67.54 c.37.1.1 31920 1yrbA 262 69.59 c.37.1.10 123915 1pvdA 537 70.80 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 3brsA 289 71.56 1zbsA 291 72.40 c.55.1.5,c.55.1.5 124870,124871 1svjA 156 74.62 d.220.1.1 106049 2phzA 311 76.89 2d2eA 250 77.37 2i3dA 249 77.85 1bupA 386 79.90 c.55.1.1,c.55.1.1 33377,33378 2bjkA 516 80.21 1yuwA 554 81.00 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2hy1A 280 84.78 2qgnA 322 87.20 1ba1 386 87.29 2ixeA 271 88.70 1jjvA 206 89.67 c.37.1.1 71698