# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in4A 334 1.884 a.4.5.11,c.37.1.20 62597,62598 1rkbA 173 2.527 c.37.1.1 111854 1e4yA 214 2.789 c.37.1.1,g.41.2.1 31901,45181 1s4qA 228 3.474 c.37.1.1 98507 1oe0A 230 3.785 c.37.1.1 92788 1s8eA 333 4.751 d.159.1.4 105368 2ax4A 198 4.892 2axpA 173 5.011 c.37.1.1 127497 1lv7A 257 5.554 c.37.1.20 78232 2z0hA 197 5.584 1fj2A 232 5.931 c.69.1.14 34720 1z8fA 228 5.986 2vp4A 230 6.261 1rz3A 201 6.272 c.37.1.6 98132 1pydA 556 6.840 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1in6A 334 6.883 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 7.939 1e32A 458 7.946 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2qt1A 207 8.056 2ccjA 205 8.404 1nn5A 215 8.622 c.37.1.1 85892 1qf9A 194 9.234 c.37.1.1 31848 1xwiA 322 9.429 2g1iA 563 10.18 2pezA 179 11.69 1n55A 251 11.88 c.1.1.1 80007 1uj2A 252 12.89 c.37.1.6 99452 1h1nA 305 12.98 c.1.8.3 70855 1qpbA 563 14.87 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1zin 217 15.84 2qorA 204 16.61 1kagA 173 16.78 c.37.1.2 72249 1gky 187 16.93 1nrjB 218 17.34 c.37.1.8 86125 1ukz 203 17.42 2ak3A 226 18.01 c.37.1.1,g.41.2.1 31892,45193 1amk 251 18.73 1znwA 207 18.90 c.37.1.1 125412 1m1nA 491 19.03 c.92.2.3 78417 1akeA 214 19.09 c.37.1.1,g.41.2.1 31905,45185 1p5zB 263 20.56 c.37.1.1 87815 1gvnB 287 20.85 c.37.1.21 76354 2cdnA 201 21.21 c.37.1.1 130289 1ak2A 233 21.43 c.37.1.1,g.41.2.1 31894,45195 1xjcA 169 23.46 c.37.1.10 115387 2rhmA 193 23.53 1hqcA 324 23.93 a.4.5.11,c.37.1.20 16127,32424 1khtA 192 24.89 c.37.1.1 84401 2p67A 341 25.33 1nksA 194 25.51 c.37.1.1 31886 2q3fA 181 25.76 1ex7A 186 26.08 c.37.1.1 59537 1zd8A 227 26.19 2c95A 196 26.64 1p3jA 217 27.02 c.37.1.1,g.41.2.1 94022,94023 1s96A 219 28.90 c.37.1.1 98740 1go2A 304 28.96 b.43.4.2,c.25.1.1 76243,76244 5tmpA 213 29.06 c.37.1.1 31931 1vmaA 306 29.59 a.24.13.1,c.37.1.10 108887,108888 1p9rA 418 29.60 c.37.1.11 94399 1akyA 220 30.15 c.37.1.1,g.41.2.1 31896,45197 1zbsA 291 30.36 c.55.1.5,c.55.1.5 124870,124871 2an9A 207 30.47 c.37.1.1 127037 7timA 247 30.52 c.1.1.1 28457 1tph1 247 30.76 1gz0A 253 32.20 c.116.1.1,d.79.3.3 76391,76392 2b8wA 328 32.41 1np6A 174 32.43 c.37.1.10 85954 2dp3A 257 33.53 1ukzA 203 34.73 c.37.1.1 31840 1zm7A 230 34.93 1egzA 291 34.99 c.1.8.3 28828 1z6gA 218 35.30 1esmA 316 36.68 c.37.1.6 31953 2plrA 213 37.77 1jb9A 316 38.44 b.43.4.2,c.25.1.1 62840,62841 2jbwA 386 38.81 1nsf 273 41.52 1b2rA 304 42.10 b.43.4.2,c.25.1.1 25648,31538 2yvuA 186 42.30 1pvdA 537 42.44 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 3c8uA 208 42.45 1gtvA 214 42.75 c.37.1.1 70537 1kv5A 250 42.87 c.1.1.1 73052 1i45A 248 44.14 c.1.1.1 61665 1kngA 156 44.62 c.47.1.10 72777 1kdoA 227 49.56 c.37.1.1 68478 1r2rA 248 51.74 c.1.1.1 96875 1nf2A 268 52.03 c.108.1.10 91849 2j27A 250 52.16 1vg8A 207 52.19 c.37.1.8 108606 1ckeA 227 57.08 c.37.1.1 31846 3b9pA 297 57.18 1xvlA 321 57.30 c.92.2.2 122380 2gsoA 393 59.15 2eyuA 261 59.57 2cbzA 237 59.86 1kezA 300 60.33 c.69.1.22 68546 1r9jA 673 60.38 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 3tmkA 216 60.91 c.37.1.1 31920 1zuwA 272 61.13 1xrjA 261 63.72 c.37.1.6 122256 1qh0A 295 64.18 b.43.4.2,c.25.1.1 68891,68892 1j33A 335 64.54 c.39.1.1 77069 2f1rA 171 64.78 2p5tB 253 70.45 1n3bA 216 70.66 c.37.1.1 79959 1m6jA 261 73.44 c.1.1.1 78693 1ctqA 166 74.94 c.37.1.8 31965 1yrbA 262 75.13 c.37.1.10 123915 1zinA 217 76.16 c.37.1.1,g.41.2.1 31915,45178 2r8bA 251 76.66 1ofhA 310 76.80 c.37.1.20 86948 1uf3A 228 78.69 d.159.1.6 99317 1b9bA 255 79.35 c.1.1.1 28531 2gzaA 361 80.42 4tmkA 213 80.67 c.37.1.1 31930 1btmA 252 81.00 c.1.1.1 28513 1y63A 184 81.76 c.37.1.1 116494 2hdwA 367 83.32 1c9kB 180 84.07 c.37.1.11 32364 1tpfA 250 84.74 c.1.1.1 28467 1sq5A 308 84.97 c.37.1.6 105882 2qjwA 176 85.28 2bwjA 199 85.79 1svjA 156 86.71 d.220.1.1 106049 1ipaA 274 88.22 c.116.1.1,d.79.3.3 71254,71255 2b30A 301 89.29 c.108.1.10 127759