# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gtmA 419 1.618 c.2.1.7,c.58.1.1 30223,33871 1zuwA 272 2.213 1gvnB 287 4.288 c.37.1.21 76354 2bmaA 470 5.479 2p8uA 478 5.623 1gdhA 320 6.673 c.2.1.4,c.23.12.1 30095,31355 2bbsA 290 7.536 1anf 370 8.297 1do0A 442 8.536 c.37.1.20 32432 2dwuA 276 9.415 1f0kA 364 10.03 c.87.1.2 35465 2dr1A 386 10.10 1r0wA 286 12.77 c.37.1.12 96754 1ceo 343 13.29 2iv2X 715 13.32 b.52.2.2,c.81.1.1 137714,137715 1yzyA 413 13.75 c.146.1.1 124292 1xrjA 261 15.39 c.37.1.6 122256 1j5sA 463 16.84 c.1.9.8 71580 2gzmA 267 17.22 1ceoA 343 18.11 c.1.8.3 28808 1m32A 366 18.63 c.67.1.3 78508 1xl7A 612 19.35 c.43.1.3,c.43.1.3 115438,115439 1vcoA 550 19.48 c.23.16.1,c.37.1.10 108508,108509 1ybeA 449 19.91 c.1.17.2,d.41.2.2 116605,116606 1p5zB 263 20.22 c.37.1.1 87815 1anfA 370 20.23 c.94.1.1 35776 2i5gA 325 20.86 1gnxA 479 21.89 c.1.8.4 76241 2jepA 395 22.87 1ug6A 431 23.36 c.1.8.4 88490 1t6cA 315 23.91 c.55.1.8,c.55.1.8 106558,106559 1vpqA 273 24.31 c.1.32.1 113974 3c2qA 345 24.77 1amk 251 24.82 3c5iA 369 24.83 1x6vA 630 24.98 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1kdoA 227 26.15 c.37.1.1 68478 1zbsA 291 26.31 c.55.1.5,c.55.1.5 124870,124871 1vbuA 328 26.39 c.1.8.3 119963 1laxA 370 28.21 c.94.1.1 84576 1xpmA 396 29.53 c.95.1.2,c.95.1.2 115759,115760 1d0vA 356 30.11 c.39.1.1 32476 2g76A 335 30.71 1iqpA 327 30.87 a.80.1.1,c.37.1.20 62649,62650 2dbqA 334 31.56 1od2A 805 31.79 c.14.1.4,c.14.1.4 86821,86822 1wwkA 307 32.29 1sq5A 308 32.71 c.37.1.6 105882 1esmA 316 32.98 c.37.1.6 31953 2ragA 417 33.84 2pq6A 482 34.29 2q8uA 336 34.35 1a7lA 389 35.85 c.94.1.1 35787 2ccjA 205 37.80 1umdA 367 37.93 c.36.1.11 99599 2ip2A 334 38.33 1tuoA 464 38.40 1n55A 251 39.28 c.1.1.1 80007 1eyzA 392 39.36 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2h4tA 626 40.56 1ytvA 366 41.23 c.94.1.1 124016 1iugA 352 41.97 c.67.1.3 90699 2axpA 173 42.57 c.37.1.1 127497 1lv7A 257 44.11 c.37.1.20 78232 2hf9A 226 44.28 1gowA 489 44.91 c.1.8.4 28981 1x19A 359 45.10 1fdyA 297 45.10 c.1.10.1 29071 1yt8A 539 45.32 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2vchA 480 45.87 1xkyA 301 46.57 c.1.10.1 122094 1y7oA 218 46.89 c.14.1.1 122701 1l5oA 356 47.73 c.39.1.1 77711 1ypxA 375 48.17 1bncA 449 48.25 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 2iyfA 430 48.55 1sxjC 340 49.02 a.80.1.1,c.37.1.20 106085,106086 1yslA 402 49.22 1z7aA 308 50.27 c.6.2.6 124591 1ymqA 261 50.51 c.108.1.10 123707 3bh1A 507 50.80 1in4A 334 51.12 a.4.5.11,c.37.1.20 62597,62598 2dp3A 257 51.16 2d3yA 219 53.57 1q3qA 548 54.40 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 2ixeA 271 54.93 2j3xA 431 55.01 1nal1 297 55.03 2qpxA 376 55.12 1kjqA 391 56.12 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1ujqA 305 56.34 c.1.12.7 99463 1n97A 389 56.99 a.104.1.1 80335 1gky 187 57.23 2i62A 265 57.84 2d0oA 610 59.38 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1xpkC 388 59.77 c.95.1.2,c.95.1.2 115747,115748 1ex7A 186 60.10 c.37.1.1 59537 2j27A 250 60.42 1xc1A 309 61.25 c.94.1.1 109543 1kv5A 250 61.55 c.1.1.1 73052 2a5yB 549 62.16 1tpfA 250 62.24 c.1.1.1 28467 1b26A 416 62.54 c.2.1.7,c.58.1.1 30232,33880 1tadA 324 62.62 a.66.1.1,c.37.1.8 18194,32077 1mj3A 260 64.51 c.14.1.3 79183 2hnkA 239 65.19 1t7lA 766 65.60 1tq4A 413 66.29 c.37.1.8 107201 1ez1A 392 66.35 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1g6hA 257 66.56 c.37.1.12 60318 2exrA 524 66.94 2ay1A 394 67.32 c.67.1.1 34357 1oyc 400 67.36 2qf7A 1165 67.79 1cipA 353 68.93 a.66.1.1,c.37.1.8 18210,32093 1b0uA 262 69.10 c.37.1.12 32370 2gh9A 386 69.38 1rhs 296 69.87 1b5pA 385 70.33 c.67.1.1 90403 1uwsA 489 70.84 c.1.8.4 108073 1zd8A 227 71.48 1afwA 393 71.73 c.95.1.1,c.95.1.1 35900,35901 2gcgA 330 72.11 1li4A 432 72.13 c.2.1.4,c.23.12.3 84616,84617 1w78A 422 72.35 1ug3A 339 73.80 a.118.1.14,a.118.1.14 119671,119672 1nal3 297 73.89 1uqtA 482 74.99 c.87.1.6 99794 1mzjA 339 76.04 c.95.1.2,c.95.1.2 79700,79701 3c4vA 426 76.10 2qacA 146 76.65 1tr1A 447 77.52 c.1.8.4 28957 1bgvA 449 78.08 c.2.1.7,c.58.1.1 30217,33865 2j5bA 348 78.80 1edg 380 78.87 1svsA 353 79.00 c.37.1.8 106051 1yx1A 264 81.58 c.1.15.7 124169 2ak3A 226 82.88 c.37.1.1,g.41.2.1 31892,45193 1p5dX 463 83.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1odfA 290 83.19 c.37.1.6 92782 2dvzA 314 83.26 1chmA 401 83.53 c.55.2.1,d.127.1.1 33545,41142 1uyrA 737 84.11 c.14.1.4,c.14.1.4 100188,100189 2hmcA 344 84.18 1omrA 201 84.76 a.39.1.5 93349 1m15A 357 85.91 a.83.1.1,d.128.1.2 78368,78369 1o0sA 605 85.97 c.2.1.7,c.58.1.3 86540,86541 1qp8A 303 86.82 c.2.1.4,c.23.12.1 30092,31352 1k89 449 87.08 1n3lA 372 87.38 c.26.1.1 79966 1edgA 380 87.63 c.1.8.3 28807 1xwiA 322 88.49 1gc5A 467 88.49 c.72.1.3 60429 1hrdA 449 89.47 c.2.1.7,c.58.1.1 30219,33867 1vl6A 388 89.79 c.2.1.7,c.58.1.3 108724,108725 1m6jA 261 89.87 c.1.1.1 78693