# List of top-scoring protein chains for T0419.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j289	430	2.977		
2plrA	213	5.049		
2yvuA	186	5.405		
1e9fA	217	6.317	c.37.1.1	64811
2ixfA	271	9.154		
2ixeA	271	9.154		
2ixgA	271	9.183		
2pbrA	195	10.73		
1ftsA	295	11.98	a.24.13.1,c.37.1.10	16968,32279
2qy9A	309	12.95		
3b9qA	302	12.95		
2z0hA	197	13.06		
2og2A	359	14.71		
1vmaA	306	21.46	a.24.13.1,c.37.1.10	108887,108888
1uj2A	252	21.78	c.37.1.6	99452
1xrjA	261	22.62	c.37.1.6	122256
2iyoA	472	23.81		
2iypA	473	23.81		
2iz1A	474	23.84		
1z6gA	218	23.99		
2hnaA	147	24.71		
2f1rA	171	26.56		
3bioA	304	26.94		
2p90A	319	27.05		
1qzxA	440	27.60	a.24.13.1,a.36.1.1,c.37.1.10	96711,96712,96713
1j8mF	297	27.62	a.24.13.1,c.37.1.10	62742,62743
1mv5A	243	28.91	c.37.1.12	91469
2qorA	204	29.12		
1e9eA	215	29.49	c.37.1.1	64810
3bb1A	274	30.73		
1j8yF	297	30.80	a.24.13.1,c.37.1.10	62747,62748
1gtvA	214	30.83	c.37.1.1	70537
1h65A	270	31.04	c.37.1.8	65640
1nn5A	215	31.20	c.37.1.1	85892
1mtoA	319	31.65	c.89.1.1	79458
1e98A	215	33.89	c.37.1.1	64804
1s9iA	354	35.73	d.144.1.7	112047
1jj7A	260	37.61	c.37.1.12	63114
1nmyA	209	40.46	c.37.1.1	85883
1pr9A	244	45.48	c.2.1.2	95060
1fzqA	181	47.86	c.37.1.8	32060
1ny6A	267	49.70	c.37.1.20	92321
2v3cC	432	58.77		
2p55A	333	62.06		
1s9jA	341	63.18	d.144.1.7	112049
1z8fA	228	65.55		
2yz2A	266	69.31		
2j41A	207	69.79		
1s4qA	228	72.37	c.37.1.1	98507
1qhxA	178	72.54	c.37.1.3	31936
1znwA	207	73.22	c.37.1.1	125412
4pfkA	319	73.84	c.89.1.1	35582
6pfkA	319	78.93	c.89.1.1	35583
1t6dA	315	80.13	c.55.1.8,c.55.1.8	106560,106561
1oxxK	353	82.24	b.40.6.3,c.37.1.12	93715,93716
1kdoA	227	82.77	c.37.1.1	68478
1ny5A	387	84.06	c.23.1.1,c.37.1.20	92317,92318
2d7uA	339	84.61		
1lv7A	257	87.00	c.37.1.20	78232
2femA	227	87.71		
1bifA	469	88.18	c.37.1.7,c.60.1.4	31961,34003
2bifA	469	88.63	c.37.1.7,c.60.1.4	31963,34009
3bifA	468	88.68	c.37.1.7,c.60.1.4	31962,34008
2pjzA	263	88.88