# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.2354 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 0.5619 a.4.5.11,c.37.1.20 62597,62598 2pbrA 195 0.6173 2z0hA 197 2.406 2gzaA 361 2.646 1xjcA 169 2.752 c.37.1.10 115387 1sxjE 354 3.737 a.80.1.1,c.37.1.20 106089,106090 1n2zA 245 3.790 c.92.2.2 79865 2pt7A 330 3.833 1g6oA 330 4.724 c.37.1.11 32430 2qjwA 176 4.806 1bifA 469 5.635 c.37.1.7,c.60.1.4 31961,34003 1np6A 174 5.807 c.37.1.10 85954 1p5zB 263 6.888 c.37.1.1 87815 2f1rA 171 7.484 1khtA 192 7.671 c.37.1.1 84401 2p5tB 253 7.876 2o2gA 223 9.377 2gxaA 274 10.00 2oap1 511 11.70 1qhfA 240 11.89 c.60.1.1 33960 1n4aA 252 12.21 c.92.2.2 85317 1ki9A 192 12.65 c.37.1.1 84404 1riiA 265 13.11 c.60.1.1 111807 3b9pA 297 13.13 1lv7A 257 13.79 c.37.1.20 78232 2j41A 207 14.16 1njgA 250 14.76 c.37.1.20 85785 2rhmA 193 15.09 1ev5A 264 15.79 d.117.1.1 40935 1qqqA 264 16.74 d.117.1.1 40931 1htwA 158 16.88 c.37.1.18 71083 3c8uA 208 18.78 2bklA 695 19.38 2bjvA 265 19.62 1tca 317 20.21 3be4A 217 22.21 1zu4A 320 22.35 1viaA 175 22.37 c.37.1.2 100754 2g8mA 264 22.72 1xewX 182 22.89 c.37.1.12 115235 2g8oA 264 23.08 d.117.1.1 134779 1g8pA 350 23.48 c.37.1.20 60376 1yyaA 250 24.27 2f2eA 146 24.34 a.4.5.69 132808 2r44A 331 24.37 1ukzA 203 25.08 c.37.1.1 31840 1ukz 203 25.21 2ixeA 271 26.37 1rz3A 201 26.66 c.37.1.6 98132 1odfA 290 26.87 c.37.1.6 92782 2ccjA 205 27.09 1d2nA 272 27.55 c.37.1.20 32428 2eyuA 261 27.95 1ltqA 301 29.85 c.108.1.9,c.37.1.1 78208,78209 2hhjA 267 30.63 c.60.1.1 136497 1ly1A 181 31.01 c.37.1.1 74334 1x6vA 630 31.24 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3b9qA 302 31.79 1bkpA 278 32.06 d.117.1.1 41029 2c42A 1231 34.07 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2vp4A 230 34.29 1f6bA 198 34.34 c.37.1.8 64986 2ak3A 226 34.51 c.37.1.1,g.41.2.1 31892,45193 1yr2A 741 35.36 2yvuA 186 35.61 1akyA 220 36.70 c.37.1.1,g.41.2.1 31896,45197 1imjA 210 37.09 c.69.1.23 71246 2bonA 332 37.20 2pzeA 229 37.56 1p6xA 334 37.97 c.37.1.1 94195 2a5yB 549 39.47 1bu8A 452 40.21 b.12.1.2,c.69.1.19 23647,34795 2hu5A 582 40.71 b.69.7.2,c.69.1.33 136763,136764 1ufoA 238 40.78 c.69.1.27 99344 2ff7A 247 42.99 c.37.1.12 133377 1r3sA 367 43.32 c.1.22.1 96963 1nn5A 215 44.65 c.37.1.1 85892 2pblA 262 45.10 3bs4A 260 45.80 1e58A 249 46.17 c.60.1.1 59262 1r2rA 248 48.23 c.1.1.1 96875 2qw5A 335 48.73 1bif 469 48.84 1hplA 449 50.78 b.12.1.2,c.69.1.19 23639,34787 1o5xA 248 50.90 c.1.1.1 92528 2yqcA 486 51.53 1e4yA 214 52.56 c.37.1.1,g.41.2.1 31901,45181 1neyA 247 54.01 c.1.1.1 80449 1n55A 251 54.51 c.1.1.1 80007 1f0kA 364 54.81 c.87.1.2 35465 1m6jA 261 55.56 c.1.1.1 78693 1e2kA 331 56.09 c.37.1.1 31854 2ikqA 270 56.18 2axpA 173 56.24 c.37.1.1 127497 2cbzA 237 56.36 2orwA 184 56.67 1rj9A 304 56.87 a.24.13.1,c.37.1.10 97553,97554 1ypvA 313 57.48 2b20A 403 57.60 b.1.18.20,c.69.1.2 127685,127686 2pmkA 243 58.55 1ye8A 178 58.98 c.37.1.11 123010 2zgyA 320 60.22 2aamA 309 60.53 c.1.8.15 126489 1b9bA 255 60.75 c.1.1.1 28531 2dp3A 257 62.34 1y63A 184 63.45 c.37.1.1 116494 3bh0A 315 64.25 1kv5A 250 64.94 c.1.1.1 73052 2vhjA 331 65.40 1mo0A 275 66.55 c.1.1.1 79329 2citA 282 66.94 c.1.8.3 130499 2c9oA 456 68.05 1ji0A 240 69.28 c.37.1.12 71665 2higA 487 69.70 2zdrA 349 70.86 1xuuA 349 70.90 b.85.1.1,c.1.10.6 116067,116068 2c31A 568 70.98 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1gtvA 214 71.17 c.37.1.1 70537 2an9A 207 71.47 c.37.1.1 127037 3bxpA 277 73.56 1of1A 376 74.04 c.37.1.1 103924 2j27A 250 75.12 2puhA 286 75.15 1ydgA 211 75.63 c.23.5.8 116614 2dy1A 665 75.92 1kufA 203 75.98 d.92.1.9 73007 1qf9A 194 76.42 c.37.1.1 31848 2yweA 600 77.64 1j8mF 297 77.93 a.24.13.1,c.37.1.10 62742,62743 2ihyA 279 80.37 1kgdA 180 80.96 c.37.1.1 68582 2hfkA 319 82.99 1gl6A 436 83.42 c.37.1.11 70259 2og1A 286 84.00 2uz0A 263 84.41 1tcaA 317 84.66 c.69.1.17 34726 1yixA 265 84.74 c.1.9.12 123371 2g1iA 563 85.07 2qruA 274 85.42 2vo1A 295 86.07 4tmkA 213 86.09 c.37.1.1 31930 2bdqA 224 86.33 2etvA 346 86.56 c.92.2.4 132372 2ax4A 198 87.17 2qy9A 309 88.00 1sxjC 340 88.06 a.80.1.1,c.37.1.20 106085,106086 2hf9A 226 89.13 1e6cA 173 89.36 c.37.1.2 59296 2ob3A 330 89.43 1n8fA 350 89.74 c.1.10.4 85397