# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.2995 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.5679 1in4A 334 0.6896 a.4.5.11,c.37.1.20 62597,62598 2z0hA 197 1.225 1n2zA 245 1.785 c.92.2.2 79865 2gzaA 361 2.470 1bifA 469 3.032 c.37.1.7,c.60.1.4 31961,34003 1xjcA 169 3.346 c.37.1.10 115387 1khtA 192 3.471 c.37.1.1 84401 2qjwA 176 4.271 1riiA 265 4.441 c.60.1.1 111807 1qhfA 240 4.592 c.60.1.1 33960 1np6A 174 5.639 c.37.1.10 85954 2ccjA 205 6.082 1n4aA 252 6.675 c.92.2.2 85317 1ukzA 203 7.632 c.37.1.1 31840 1xewX 182 7.748 c.37.1.12 115235 2p5tB 253 7.973 2f1rA 171 8.287 2o2gA 223 8.666 1ukz 203 9.031 1g6oA 330 9.069 c.37.1.11 32430 2pt7A 330 9.452 1ki9A 192 9.936 c.37.1.1 84404 2bklA 695 10.87 2hhjA 267 11.14 c.60.1.1 136497 2j41A 207 11.41 1p5zB 263 11.97 c.37.1.1 87815 1bif 469 12.97 2gxaA 274 14.24 1bu8A 452 14.89 b.12.1.2,c.69.1.19 23647,34795 1zu4A 320 15.24 2oap1 511 15.41 1yr2A 741 15.80 1e4yA 214 16.43 c.37.1.1,g.41.2.1 31901,45181 1tca 317 16.58 2rhmA 193 17.43 2ak3A 226 17.93 c.37.1.1,g.41.2.1 31892,45193 3be4A 217 18.02 1htwA 158 18.13 c.37.1.18 71083 1yyaA 250 18.85 3b9qA 302 19.20 1odfA 290 20.71 c.37.1.6 92782 1e58A 249 20.98 c.60.1.1 59262 3c8uA 208 21.18 1rz3A 201 22.35 c.37.1.6 98132 2bjvA 265 22.63 1sxjE 354 23.54 a.80.1.1,c.37.1.20 106089,106090 4tmkA 213 24.41 c.37.1.1 31930 1rj9A 304 24.96 a.24.13.1,c.37.1.10 97553,97554 1hplA 449 25.72 b.12.1.2,c.69.1.19 23639,34787 1j8mF 297 25.85 a.24.13.1,c.37.1.10 62742,62743 2f2eA 146 26.46 a.4.5.69 132808 2ixeA 271 28.60 3bs4A 260 28.88 2vp4A 230 29.06 2eyuA 261 30.28 2pblA 262 30.40 3b9pA 297 31.54 1lv7A 257 31.99 c.37.1.20 78232 2hu5A 582 32.06 b.69.7.2,c.69.1.33 136763,136764 2hf9A 226 32.39 2a5yB 549 33.22 2ff7A 247 33.28 c.37.1.12 133377 1f6bA 198 35.22 c.37.1.8 64986 1qqqA 264 35.47 d.117.1.1 40931 1p6xA 334 35.53 c.37.1.1 94195 1r3sA 367 36.18 c.1.22.1 96963 2orwA 184 36.88 1d2nA 272 37.07 c.37.1.20 32428 2qruA 274 37.61 2bonA 332 37.61 1ufoA 238 37.69 c.69.1.27 99344 1akyA 220 38.09 c.37.1.1,g.41.2.1 31896,45197 2g8oA 264 39.01 d.117.1.1 134779 1ev5A 264 40.25 d.117.1.1 40935 2g8mA 264 40.37 1e6cA 173 40.53 c.37.1.2 59296 1nn5A 215 40.91 c.37.1.1 85892 2qy9A 309 41.88 1imjA 210 42.97 c.69.1.23 71246 1viaA 175 44.04 c.37.1.2 100754 1neyA 247 45.37 c.1.1.1 80449 1njgA 250 46.04 c.37.1.20 85785 2ikqA 270 46.05 1x6vA 630 46.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qw5A 335 47.87 2og1A 286 48.22 1e2kA 331 48.75 c.37.1.1 31854 1r2rA 248 49.01 c.1.1.1 96875 1m6jA 261 49.45 c.1.1.1 78693 1ypvA 313 49.98 1n8fA 350 51.42 c.1.10.4 85397 2pmkA 243 51.64 1of1A 376 52.94 c.37.1.1 103924 2hfkA 319 54.76 2dp3A 257 55.28 2pzeA 229 55.46 1v7zA 260 55.89 c.125.1.1 100488 1n55A 251 56.72 c.1.1.1 80007 2r44A 331 58.71 1ly1A 181 59.73 c.37.1.1 74334 2b20A 403 60.15 b.1.18.20,c.69.1.2 127685,127686 2etvA 346 60.82 c.92.2.4 132372 2vhjA 331 63.14 2aamA 309 64.25 c.1.8.15 126489 1o5xA 248 64.29 c.1.1.1 92528 2citA 282 65.76 c.1.8.3 130499 1kv5A 250 66.72 c.1.1.1 73052 2puhA 286 66.83 2qt1A 207 66.91 2ihyA 279 67.13 1f0kA 364 68.85 c.87.1.2 35465 1mo0A 275 69.16 c.1.1.1 79329 2uz0A 263 70.28 1b9bA 255 70.81 c.1.1.1 28531 1z06A 189 70.85 c.37.1.8 124301 2zgyA 320 71.27 1kgdA 180 71.74 c.37.1.1 68582 2j27A 250 72.85 2q8pA 260 74.78 1tcaA 317 76.49 c.69.1.17 34726 2cbzA 237 76.57 2c42A 1231 77.91 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1bkpA 278 78.18 d.117.1.1 41029 1e5dA 402 78.19 c.23.5.1,d.157.1.3 31208,42061 2zdrA 349 78.50 2bdqA 224 79.60 1gtvA 214 80.51 c.37.1.1 70537 2pujA 286 81.21 1gvnB 287 81.50 c.37.1.21 76354 1kufA 203 81.82 d.92.1.9 73007 1a7j 290 81.83 1m1zA 513 83.16 c.26.2.1,d.153.1.1 78457,78458 3bxpA 277 83.34 1xuuA 349 84.31 b.85.1.1,c.1.10.6 116067,116068 2yvuA 186 84.60 2ob3A 330 84.73 2yweA 600 85.31 2axpA 173 86.81 c.37.1.1 127497 1zuhA 168 88.33 1ut7A 171 88.79 b.143.1.1 99906 2cdnA 201 89.97 c.37.1.1 130289