# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.05865 1in6A 334 0.4716 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 1.108 a.4.5.11,c.37.1.20 62597,62598 1p5zB 263 1.295 c.37.1.1 87815 1n2zA 245 2.187 c.92.2.2 79865 2f1rA 171 2.525 2z0hA 197 2.641 1ukz 203 2.806 1bifA 469 2.820 c.37.1.7,c.60.1.4 31961,34003 2gzaA 361 2.936 1khtA 192 3.043 c.37.1.1 84401 2pezA 179 3.095 2p5tB 253 3.146 2yvuA 186 3.734 1np6A 174 4.032 c.37.1.10 85954 1xjcA 169 4.233 c.37.1.10 115387 1ki9A 192 4.427 c.37.1.1 84404 2qy9A 309 4.620 1ukzA 203 5.096 c.37.1.1 31840 2ccjA 205 5.649 1nn5A 215 6.187 c.37.1.1 85892 1g6oA 330 6.325 c.37.1.11 32430 1r3sA 367 7.227 c.1.22.1 96963 2pt7A 330 7.928 1n4aA 252 8.853 c.92.2.2 85317 1x6vA 630 8.965 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1sxjE 354 9.496 a.80.1.1,c.37.1.20 106089,106090 1f6bA 198 10.56 c.37.1.8 64986 2f2eA 146 10.81 a.4.5.69 132808 1e4yA 214 11.53 c.37.1.1,g.41.2.1 31901,45181 1bif 469 11.78 1riiA 265 12.65 c.60.1.1 111807 2c42A 1231 12.99 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 3b9qA 302 13.25 1qhfA 240 13.56 c.60.1.1 33960 2rhmA 193 13.60 1p6xA 334 14.92 c.37.1.1 94195 4tmkA 213 15.28 c.37.1.1 31930 2o2gA 223 15.30 1ly1A 181 15.83 c.37.1.1 74334 3c8uA 208 15.97 2ff7A 247 16.27 c.37.1.12 133377 1jpkA 388 16.93 c.1.22.1 67026 3be4A 217 17.54 1htwA 158 17.56 c.37.1.18 71083 1gvnB 287 17.65 c.37.1.21 76354 1zu4A 320 18.29 2qjwA 176 18.41 1j8mF 297 19.74 a.24.13.1,c.37.1.10 62742,62743 1v7zA 260 20.03 c.125.1.1 100488 2ax4A 198 20.95 2hhjA 267 21.29 c.60.1.1 136497 2q71A 356 21.61 2bonA 332 21.62 2pmkA 243 23.01 2pzeA 229 23.01 2orwA 184 23.78 1xewX 182 24.43 c.37.1.12 115235 1of1A 376 24.54 c.37.1.1 103924 1qf9A 194 26.21 c.37.1.1 31848 1bu8A 452 26.66 b.12.1.2,c.69.1.19 23647,34795 1ltqA 301 26.99 c.108.1.9,c.37.1.1 78208,78209 1e2kA 331 28.22 c.37.1.1 31854 2ixeA 271 29.29 2qgqA 304 29.92 2qm8A 337 30.27 2vp4A 230 30.87 1rz3A 201 31.57 c.37.1.6 98132 1viaA 175 31.73 c.37.1.2 100754 2hf9A 226 31.93 2c8eE 211 32.54 1n8fA 350 32.83 c.1.10.4 85397 2oap1 511 33.65 2eyuA 261 33.87 1odfA 290 33.93 c.37.1.6 92782 1assA 159 34.16 c.8.5.2 30818 1m6jA 261 35.74 c.1.1.1 78693 2infA 359 35.99 2ikqA 270 37.92 1neyA 247 37.98 c.1.1.1 80449 1efdN 266 38.63 c.92.2.1 35597 2vg2A 284 39.93 1gmlA 178 39.99 c.8.5.2 70273 1r2rA 248 40.50 c.1.1.1 96875 2bbsA 290 40.60 1yyaA 250 40.83 3b9pA 297 41.32 2higA 487 42.55 2c31A 568 42.85 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2zdrA 349 43.11 1mo0A 275 43.23 c.1.1.1 79329 1ydgA 211 43.82 c.23.5.8 116614 2v5xA 388 44.04 2cbzA 237 44.46 1tca 317 44.71 1hplA 449 45.01 b.12.1.2,c.69.1.19 23639,34787 2ejaA 338 46.00 1o5xA 248 46.29 c.1.1.1 92528 2chuA 296 46.38 c.92.2.4 130485 2vc7A 314 46.64 2bklA 695 47.29 2vqeI 128 47.40 1kv5A 250 47.57 c.1.1.1 73052 1jcfA 344 48.69 c.55.1.1,c.55.1.1 62878,62879 1ut7A 171 49.11 b.143.1.1 99906 1e5dA 402 49.43 c.23.5.1,d.157.1.3 31208,42061 1d2nA 272 49.46 c.37.1.20 32428 1m5wA 243 50.24 c.1.24.1 84836 2j00I 128 50.49 d.14.1.1 137847 3bs4A 260 50.59 1rj9A 304 50.72 a.24.13.1,c.37.1.10 97553,97554 1akyA 220 50.80 c.37.1.1,g.41.2.1 31896,45197 1xuuA 349 51.18 b.85.1.1,c.1.10.6 116067,116068 2j27A 250 51.51 2qw5A 335 53.36 1n55A 251 56.25 c.1.1.1 80007 1kgdA 180 56.54 c.37.1.1 68582 2bjvA 265 56.66 2j5gA 263 57.06 2ak3A 226 57.27 c.37.1.1,g.41.2.1 31892,45193 1xx6A 191 57.57 c.37.1.24,g.39.1.14 116139,116140 2q8pA 260 58.16 1kjwA 295 58.34 b.34.2.1,c.37.1.1 68643,68644 2qh8A 302 60.50 2dykA 161 61.08 2p67A 341 62.35 1ji0A 240 63.34 c.37.1.12 71665 1imjA 210 63.75 c.69.1.23 71246 7a3hA 303 64.22 c.1.8.3 28817 2r7aA 256 65.21 2bdqA 224 65.22 2bwjA 199 65.35 1yqtA 538 65.63 2j41A 207 66.25 2gxaA 274 66.51 1bkpA 278 66.54 d.117.1.1 41029 1c0pA 363 67.66 c.4.1.2,d.16.1.3 30647,37934 1gtvA 214 68.89 c.37.1.1 70537 1gz0A 253 70.49 c.116.1.1,d.79.3.3 76391,76392 1yixA 265 71.28 c.1.9.12 123371 1v4pA 157 71.54 d.67.1.2 113533 2olrA 540 72.11 c.91.1.1,c.109.1.1 139140,139141 1qqqA 264 73.43 d.117.1.1 40931 1b9bA 255 73.58 c.1.1.1 28531 1lv7A 257 74.15 c.37.1.20 78232 2pblA 262 74.18 2vbfA 570 76.47 1e58A 249 76.69 c.60.1.1 59262 1vhwA 253 79.27 c.56.2.1 100706 1ev5A 264 79.57 d.117.1.1 40935 3bh0A 315 79.90 2p35A 259 80.11 2grjA 192 81.57 2p32A 120 84.86 2an9A 207 85.53 c.37.1.1 127037 1z06A 189 86.10 c.37.1.8 124301 1yr2A 741 87.56 1h2wA 710 87.80 b.69.7.1,c.69.1.4 76596,76597 1zzmA 259 88.29 c.1.9.12 125911 1a7jA 290 88.48 c.37.1.6 31952 2fn4A 181 89.33 c.37.1.8 133806 2vo1A 295 89.66 1j93A 353 89.95 c.1.22.1 66454