# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.1100 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.2343 1in4A 334 0.3103 a.4.5.11,c.37.1.20 62597,62598 2z0hA 197 1.014 1n2zA 245 1.840 c.92.2.2 79865 2ccjA 205 2.320 1p5zB 263 3.212 c.37.1.1 87815 2gzaA 361 3.804 1xjcA 169 4.083 c.37.1.10 115387 1bifA 469 4.831 c.37.1.7,c.60.1.4 31961,34003 1n4aA 252 4.932 c.92.2.2 85317 1khtA 192 4.948 c.37.1.1 84401 2qjwA 176 5.221 2r44A 331 6.474 1np6A 174 7.085 c.37.1.10 85954 2j41A 207 7.566 1ki9A 192 7.656 c.37.1.1 84404 2pt7A 330 7.997 4tmkA 213 7.997 c.37.1.1 31930 1bif 469 8.488 1ukzA 203 8.682 c.37.1.1 31840 2o2gA 223 8.707 2f1rA 171 9.384 1htwA 158 11.38 c.37.1.18 71083 1zu4A 320 11.45 2ixeA 271 12.01 2rhmA 193 12.94 1qhfA 240 13.14 c.60.1.1 33960 2p5tB 253 13.51 2qy9A 309 13.56 1ukz 203 13.81 2q8pA 260 13.90 1xewX 182 15.32 c.37.1.12 115235 1nn5A 215 15.34 c.37.1.1 85892 2gxaA 274 15.50 3b9qA 302 15.88 1g6oA 330 17.09 c.37.1.11 32430 2oap1 511 17.12 2bjvA 265 18.12 3b9pA 297 18.43 3be4A 217 18.44 1rj9A 304 18.47 a.24.13.1,c.37.1.10 97553,97554 1f6bA 198 18.52 c.37.1.8 64986 1rz3A 201 18.76 c.37.1.6 98132 2pezA 179 18.88 2vp4A 230 19.70 1x6vA 630 20.36 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1lv7A 257 21.55 c.37.1.20 78232 2c42A 1231 21.75 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2bonA 332 22.34 2pzeA 229 22.51 2ff7A 247 22.52 c.37.1.12 133377 1njgA 250 22.85 c.37.1.20 85785 1imjA 210 23.74 c.69.1.23 71246 1sxjE 354 24.16 a.80.1.1,c.37.1.20 106089,106090 1e6cA 173 24.88 c.37.1.2 59296 3c8uA 208 24.88 2pmkA 243 24.88 2cdnA 201 24.94 c.37.1.1 130289 2ak3A 226 25.28 c.37.1.1,g.41.2.1 31892,45193 2ax4A 198 26.32 1j8mF 297 26.95 a.24.13.1,c.37.1.10 62742,62743 2g8oA 264 27.51 d.117.1.1 134779 1gvnB 287 27.54 c.37.1.21 76354 1tca 317 28.17 1bu8A 452 29.45 b.12.1.2,c.69.1.19 23647,34795 1e4yA 214 29.86 c.37.1.1,g.41.2.1 31901,45181 1r2rA 248 30.06 c.1.1.1 96875 1d2nA 272 30.18 c.37.1.20 32428 1p6xA 334 30.43 c.37.1.1 94195 2g8mA 264 30.78 1akyA 220 32.94 c.37.1.1,g.41.2.1 31896,45197 1yyaA 250 33.26 1riiA 265 33.96 c.60.1.1 111807 2cbzA 237 34.30 1qqqA 264 34.44 d.117.1.1 40931 2qgnA 322 34.53 1odfA 290 35.10 c.37.1.6 92782 2eyuA 261 35.47 2yvuA 186 35.71 2ihyA 279 37.09 1ufoA 238 37.42 c.69.1.27 99344 1viaA 175 37.57 c.37.1.2 100754 1y63A 184 37.84 c.37.1.1 116494 1yr2A 741 38.08 1ltqA 301 38.12 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 38.26 c.37.1.1 74334 2qw5A 335 39.20 2f2eA 146 39.87 a.4.5.69 132808 2bbsA 290 40.01 1ev5A 264 40.36 d.117.1.1 40935 2c31A 568 41.52 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2bklA 695 42.15 1yz7A 188 42.43 2qgqA 304 42.46 1g8pA 350 43.08 c.37.1.20 60376 2bwjA 199 43.40 1r3sA 367 45.43 c.1.22.1 96963 2zgyA 320 47.23 3bs4A 260 47.92 2ihtA 573 48.77 1qf9A 194 49.06 c.37.1.1 31848 2g1iA 563 49.12 1sq5A 308 52.23 c.37.1.6 105882 1ypvA 313 52.26 2e9xC 219 53.44 1bkpA 278 53.72 d.117.1.1 41029 1xuuA 349 54.61 b.85.1.1,c.1.10.6 116067,116068 2qm8A 337 54.80 2hu5A 582 56.03 b.69.7.2,c.69.1.33 136763,136764 2zdrA 349 56.08 2puhA 286 56.09 2pblA 262 56.46 1hplA 449 56.95 b.12.1.2,c.69.1.19 23639,34787 2nq2C 253 57.37 2ob3A 330 57.41 1ak2A 233 58.78 c.37.1.1,g.41.2.1 31894,45195 1kgdA 180 58.92 c.37.1.1 68582 2ikqA 270 59.72 2og1A 286 59.76 2chuA 296 60.46 c.92.2.4 130485 2a5lA 200 60.80 c.23.5.8 126176 2qm0A 275 61.09 1knqA 175 61.77 c.37.1.17 72786 2an9A 207 61.82 c.37.1.1 127037 2pgnA 589 61.85 1vplA 256 62.19 c.37.1.12 113966 1vmaA 306 62.60 a.24.13.1,c.37.1.10 108887,108888 2hhjA 267 62.73 c.60.1.1 136497 2axpA 173 63.81 c.37.1.1 127497 2it1A 362 66.57 2p74A 263 67.14 2i1qA 322 67.65 a.60.4.1,c.37.1.11 136984,136985 2infA 359 68.19 2qruA 274 70.41 2qt1A 207 70.43 1w9pA 433 70.78 c.1.8.5,d.26.3.1 114412,114413 2vc7A 314 71.80 2a5yB 549 71.98 2ejaA 338 72.36 1ydgA 211 72.47 c.23.5.8 116614 1m6jA 261 73.52 c.1.1.1 78693 1kngA 156 74.75 c.47.1.10 72777 1e2kA 331 76.08 c.37.1.1 31854 1itxA 419 76.42 c.1.8.5,d.26.3.1 71425,71426 1sgwA 214 78.35 c.37.1.12 105541 1n8fA 350 82.34 c.1.10.4 85397 2c95A 196 82.77 1p0kA 349 82.94 c.1.4.1 87648 2hf9A 226 82.97 2pujA 286 83.12 1neyA 247 83.49 c.1.1.1 80449 1mwmA 320 83.64 c.55.1.1,c.55.1.1 79580,79581 2q71A 356 83.95 1m1zA 513 84.66 c.26.2.1,d.153.1.1 78457,78458 1ji0A 240 84.70 c.37.1.12 71665 1zpdA 568 85.09 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1b9bA 255 85.13 c.1.1.1 28531 1gl6A 436 85.92 c.37.1.11 70259 1zin 217 86.59 1b0uA 262 86.72 c.37.1.12 32370 2q0oA 236 87.28 2uz0A 263 87.44 1jcfA 344 89.09 c.55.1.1,c.55.1.1 62878,62879 2p67A 341 89.12