# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.1080 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 0.2514 a.4.5.11,c.37.1.20 62597,62598 2pbrA 195 0.3492 2z0hA 197 1.616 1n2zA 245 2.220 c.92.2.2 79865 2ccjA 205 2.314 1xjcA 169 2.354 c.37.1.10 115387 2gzaA 361 3.077 1khtA 192 3.257 c.37.1.1 84401 1p5zB 263 3.760 c.37.1.1 87815 1bifA 469 4.553 c.37.1.7,c.60.1.4 31961,34003 2j41A 207 5.669 1n4aA 252 6.351 c.92.2.2 85317 2pt7A 330 7.151 2r44A 331 7.350 2qjwA 176 7.652 1np6A 174 7.976 c.37.1.10 85954 1ki9A 192 7.995 c.37.1.1 84404 4tmkA 213 8.023 c.37.1.1 31930 1bif 469 9.028 2f1rA 171 9.500 2rhmA 193 10.23 1zu4A 320 10.47 2o2gA 223 10.57 1ukz 203 11.61 1ukzA 203 11.67 c.37.1.1 31840 2p5tB 253 11.77 2qy9A 309 11.93 2gxaA 274 12.42 1g6oA 330 12.56 c.37.1.11 32430 1qhfA 240 12.88 c.60.1.1 33960 3b9pA 297 14.02 1f6bA 198 14.04 c.37.1.8 64986 2ixeA 271 14.09 1rj9A 304 14.14 a.24.13.1,c.37.1.10 97553,97554 2bjvA 265 14.90 2c42A 1231 15.23 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2oap1 511 15.24 3b9qA 302 15.32 2q8pA 260 15.41 1sxjE 354 16.74 a.80.1.1,c.37.1.20 106089,106090 1njgA 250 17.39 c.37.1.20 85785 1yyaA 250 17.82 2pezA 179 18.38 1r2rA 248 18.43 c.1.1.1 96875 2bonA 332 18.51 1xewX 182 18.67 c.37.1.12 115235 1htwA 158 18.89 c.37.1.18 71083 2g8oA 264 18.95 d.117.1.1 134779 2ax4A 198 19.23 2vp4A 230 19.67 1x6vA 630 19.87 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1lv7A 257 20.33 c.37.1.20 78232 1nn5A 215 20.80 c.37.1.1 85892 3be4A 217 21.61 1qqqA 264 21.76 d.117.1.1 40931 2g8mA 264 22.44 2f2eA 146 23.48 a.4.5.69 132808 1ev5A 264 23.62 d.117.1.1 40935 1rz3A 201 23.63 c.37.1.6 98132 2qgnA 322 23.72 2ak3A 226 24.01 c.37.1.1,g.41.2.1 31892,45193 3c8uA 208 25.04 2ff7A 247 25.56 c.37.1.12 133377 1ltqA 301 26.43 c.108.1.9,c.37.1.1 78208,78209 1riiA 265 27.16 c.60.1.1 111807 1j8mF 297 27.91 a.24.13.1,c.37.1.10 62742,62743 1tca 317 28.20 1e6cA 173 29.47 c.37.1.2 59296 2pmkA 243 30.25 1odfA 290 30.30 c.37.1.6 92782 1g8pA 350 30.86 c.37.1.20 60376 1d2nA 272 31.33 c.37.1.20 32428 2cdnA 201 31.73 c.37.1.1 130289 1ly1A 181 32.35 c.37.1.1 74334 1yr2A 741 32.85 1e4yA 214 33.74 c.37.1.1,g.41.2.1 31901,45181 1imjA 210 33.90 c.69.1.23 71246 2pzeA 229 34.38 2yvuA 186 35.50 2qw5A 335 36.21 2bklA 695 37.27 1gvnB 287 37.65 c.37.1.21 76354 1akyA 220 38.08 c.37.1.1,g.41.2.1 31896,45197 1ufoA 238 38.60 c.69.1.27 99344 1ydgA 211 39.01 c.23.5.8 116614 1y63A 184 39.66 c.37.1.1 116494 2eyuA 261 39.66 2cbzA 237 40.16 1qf9A 194 40.76 c.37.1.1 31848 1viaA 175 41.83 c.37.1.2 100754 1o5xA 248 42.99 c.1.1.1 92528 1bu8A 452 43.23 b.12.1.2,c.69.1.19 23647,34795 1ji0A 240 43.80 c.37.1.12 71665 2ikqA 270 44.11 1m6jA 261 44.47 c.1.1.1 78693 1r3sA 367 44.52 c.1.22.1 96963 1neyA 247 45.16 c.1.1.1 80449 2ihyA 279 45.34 1w9pA 433 46.00 c.1.8.5,d.26.3.1 114412,114413 2g1iA 563 46.10 1yz7A 188 46.16 1bkpA 278 47.07 d.117.1.1 41029 2zgyA 320 48.34 2ihtA 573 48.97 1knqA 175 49.41 c.37.1.17 72786 1mo0A 275 49.50 c.1.1.1 79329 2bwjA 199 49.50 2pcjA 224 49.83 2hhjA 267 50.30 c.60.1.1 136497 1p6xA 334 50.97 c.37.1.1 94195 1goiA 499 52.36 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2axpA 173 52.44 c.37.1.1 127497 1a7jA 290 52.92 c.37.1.6 31952 2hu5A 582 52.93 b.69.7.2,c.69.1.33 136763,136764 2c31A 568 53.30 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1n55A 251 53.95 c.1.1.1 80007 1sq5A 308 54.01 c.37.1.6 105882 2gzxA 265 54.58 1vplA 256 54.69 c.37.1.12 113966 2pblA 262 54.75 1a7j 290 55.29 2j27A 250 56.96 1hplA 449 57.83 b.12.1.2,c.69.1.19 23639,34787 1ak2A 233 58.07 c.37.1.1,g.41.2.1 31894,45195 2infA 359 58.48 1b9bA 255 58.76 c.1.1.1 28531 2pgnA 589 59.51 1vmaA 306 60.30 a.24.13.1,c.37.1.10 108887,108888 2qm0A 275 60.60 2qt1A 207 60.94 2higA 487 64.29 2qruA 274 64.47 1kv5A 250 64.87 c.1.1.1 73052 1kgdA 180 65.02 c.37.1.1 68582 2p74A 263 67.29 2bbsA 290 68.18 2ejaA 338 68.90 2yvtA 260 69.48 1itxA 419 70.22 c.1.8.5,d.26.3.1 71425,71426 1yixA 265 70.42 c.1.9.12 123371 1kagA 173 71.14 c.37.1.2 72249 2og1A 286 71.55 1ypvA 313 71.90 2citA 282 73.26 c.1.8.3 130499 2a5yB 549 73.46 2a5lA 200 73.60 c.23.5.8 126176 1din 236 74.28 2vc7A 314 74.91 1zin 217 75.22 1v7zA 260 75.83 c.125.1.1 100488 2chuA 296 75.99 c.92.2.4 130485 2c95A 196 76.46 2puhA 286 76.57 1sxjC 340 78.05 a.80.1.1,c.37.1.20 106085,106086 1zuhA 168 78.09 1e9rA 437 78.29 c.37.1.11 64827 2qm8A 337 78.33 2q71A 356 79.02 1ls1A 295 79.37 a.24.13.1,c.37.1.10 78170,78171 2it1A 362 80.10 1gmlA 178 80.97 c.8.5.2 70273 2q0oA 236 81.96 1m1zA 513 82.83 c.26.2.1,d.153.1.1 78457,78458 1n8fA 350 83.66 c.1.10.4 85397 2dp3A 257 84.10 2csuA 457 84.24 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3bs4A 260 84.43 2ob3A 330 85.99 2qgqA 304 86.25 2hf9A 226 87.26 1vf8A 377 87.58 c.1.8.5,d.26.3.1 120029,120030 2yqcA 486 88.71 1jcfA 344 89.74 c.55.1.1,c.55.1.1 62878,62879