# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.09615 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 0.2254 a.4.5.11,c.37.1.20 62597,62598 2pbrA 195 0.2434 2z0hA 197 1.438 1n2zA 245 2.165 c.92.2.2 79865 2ccjA 205 2.326 1bifA 469 3.097 c.37.1.7,c.60.1.4 31961,34003 1xjcA 169 3.406 c.37.1.10 115387 1p5zB 263 3.677 c.37.1.1 87815 1khtA 192 3.753 c.37.1.1 84401 2gzaA 361 3.900 1n4aA 252 6.260 c.92.2.2 85317 1bif 469 6.448 2qjwA 176 6.608 2r44A 331 7.335 1ki9A 192 7.634 c.37.1.1 84404 4tmkA 213 8.190 c.37.1.1 31930 2pt7A 330 8.301 2o2gA 223 8.709 2qy9A 309 8.921 2j41A 207 9.064 1np6A 174 9.457 c.37.1.10 85954 2f1rA 171 9.96 1ukzA 203 10.02 c.37.1.1 31840 1f6bA 198 11.74 c.37.1.8 64986 2rhmA 193 11.75 2bjvA 265 12.28 1zu4A 320 12.64 2ixeA 271 13.09 1g6oA 330 13.56 c.37.1.11 32430 2p5tB 253 14.20 3b9qA 302 14.29 2vp4A 230 14.76 1ukz 203 15.39 1rz3A 201 15.81 c.37.1.6 98132 1rj9A 304 16.32 a.24.13.1,c.37.1.10 97553,97554 2oap1 511 16.72 1qhfA 240 16.96 c.60.1.1 33960 2gxaA 274 17.03 1htwA 158 17.35 c.37.1.18 71083 2c42A 1231 18.42 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1sxjE 354 18.53 a.80.1.1,c.37.1.20 106089,106090 1lv7A 257 18.91 c.37.1.20 78232 3b9pA 297 19.15 2q8pA 260 20.78 1xewX 182 20.83 c.37.1.12 115235 2g8oA 264 21.18 d.117.1.1 134779 3be4A 217 21.91 1tca 317 22.15 1x6vA 630 22.47 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1yyaA 250 23.04 2ff7A 247 23.20 c.37.1.12 133377 1njgA 250 23.25 c.37.1.20 85785 2g8mA 264 24.33 2ak3A 226 24.78 c.37.1.1,g.41.2.1 31892,45193 1bu8A 452 24.79 b.12.1.2,c.69.1.19 23647,34795 1qqqA 264 24.97 d.117.1.1 40931 1nn5A 215 25.12 c.37.1.1 85892 3c8uA 208 25.48 2f2eA 146 26.15 a.4.5.69 132808 2pezA 179 26.77 1ly1A 181 26.78 c.37.1.1 74334 1gvnB 287 27.28 c.37.1.21 76354 1r2rA 248 27.80 c.1.1.1 96875 2cdnA 201 27.84 c.37.1.1 130289 1e6cA 173 27.94 c.37.1.2 59296 1ltqA 301 28.24 c.108.1.9,c.37.1.1 78208,78209 1ev5A 264 28.25 d.117.1.1 40935 2pzeA 229 30.25 2bonA 332 30.34 2ax4A 198 30.61 1ypvA 313 32.36 1akyA 220 32.73 c.37.1.1,g.41.2.1 31896,45197 1g8pA 350 33.89 c.37.1.20 60376 1odfA 290 34.10 c.37.1.6 92782 2qgnA 322 34.69 2pmkA 243 35.17 1r3sA 367 39.94 c.1.22.1 96963 1ufoA 238 40.04 c.69.1.27 99344 1imjA 210 40.05 c.69.1.23 71246 2a5yB 549 40.19 2bklA 695 40.37 2ihyA 279 40.46 2c31A 568 40.99 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1p6xA 334 41.27 c.37.1.1 94195 2zgyA 320 41.78 1yr2A 741 41.82 2qt1A 207 42.39 1goiA 499 42.50 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1d2nA 272 42.77 c.37.1.20 32428 1viaA 175 43.42 c.37.1.2 100754 1riiA 265 45.28 c.60.1.1 111807 2qgqA 304 45.31 1qf9A 194 45.65 c.37.1.1 31848 2ikqA 270 45.98 2hu5A 582 46.25 b.69.7.2,c.69.1.33 136763,136764 2qw5A 335 47.50 2eyuA 261 47.81 1bkpA 278 48.03 d.117.1.1 41029 2ob3A 330 48.04 2axpA 173 48.49 c.37.1.1 127497 2cbzA 237 49.72 1yz7A 188 49.89 1kgdA 180 51.66 c.37.1.1 68582 2pblA 262 51.69 2yvuA 186 51.84 1hplA 449 52.07 b.12.1.2,c.69.1.19 23639,34787 2bwjA 199 53.31 1w9pA 433 54.98 c.1.8.5,d.26.3.1 114412,114413 2qm0A 275 55.17 1e4yA 214 55.37 c.37.1.1,g.41.2.1 31901,45181 1j8mF 297 56.51 a.24.13.1,c.37.1.10 62742,62743 2qm8A 337 56.73 2g1iA 563 57.03 2bbsA 290 57.30 1y63A 184 57.92 c.37.1.1 116494 1m6jA 261 58.26 c.1.1.1 78693 2hhjA 267 58.70 c.60.1.1 136497 2ejaA 338 58.98 2yvtA 260 60.51 2ihtA 573 60.68 2pcjA 224 60.70 1e9rA 437 61.50 c.37.1.11 64827 1sq5A 308 62.89 c.37.1.6 105882 2vc7A 314 63.20 1neyA 247 64.16 c.1.1.1 80449 1ji0A 240 65.12 c.37.1.12 71665 1ydgA 211 65.22 c.23.5.8 116614 1itxA 419 65.84 c.1.8.5,d.26.3.1 71425,71426 1vplA 256 66.08 c.37.1.12 113966 1e2kA 331 67.95 c.37.1.1 31854 2pgnA 589 68.11 1knqA 175 68.59 c.37.1.17 72786 2chuA 296 68.71 c.92.2.4 130485 1v7zA 260 69.05 c.125.1.1 100488 1ak2A 233 69.36 c.37.1.1,g.41.2.1 31894,45195 2p74A 263 69.38 2q71A 356 69.60 1b9bA 255 70.09 c.1.1.1 28531 1gmlA 178 70.40 c.8.5.2 70273 2qruA 274 70.96 1gl6A 436 72.03 c.37.1.11 70259 2infA 359 72.64 1n8fA 350 73.61 c.1.10.4 85397 2og1A 286 73.83 1a7jA 290 73.91 c.37.1.6 31952 3bs4A 260 74.06 1tcaA 317 75.22 c.69.1.17 34726 2citA 282 75.23 c.1.8.3 130499 2puhA 286 76.04 1o5xA 248 76.51 c.1.1.1 92528 1zunB 434 77.18 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2aamA 309 77.70 c.1.8.15 126489 2cxxA 190 79.11 c.37.1.8 131013 1zuhA 168 81.47 1kv5A 250 81.90 c.1.1.1 73052 2j27A 250 82.78 1a7j 290 84.94 2c95A 196 85.28 1zpdA 568 85.49 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2it1A 362 85.65 1mwmA 320 86.26 c.55.1.1,c.55.1.1 79580,79581 1kagA 173 86.34 c.37.1.2 72249 1u0jA 267 86.51 c.37.1.20 107546 1zin 217 87.36 1m1zA 513 88.00 c.26.2.1,d.153.1.1 78457,78458 3bxpA 277 89.58