# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.1251 2rhmA 193 1.355 1in6A 334 1.496 a.4.5.11,c.37.1.20 62601,62602 2qjwA 176 2.494 1np6A 174 3.418 c.37.1.10 85954 1gvnB 287 3.565 c.37.1.21 76354 1in4A 334 4.020 a.4.5.11,c.37.1.20 62597,62598 1bifA 469 4.362 c.37.1.7,c.60.1.4 31961,34003 2o2gA 223 4.884 1bif 469 5.205 1khtA 192 5.380 c.37.1.1 84401 1p6xA 334 5.648 c.37.1.1 94195 1p5zB 263 5.739 c.37.1.1 87815 1xjcA 169 6.294 c.37.1.10 115387 1jjvA 206 6.596 c.37.1.1 71698 1of1A 376 7.052 c.37.1.1 103924 2p5tB 253 7.660 2gzaA 361 7.747 1ki9A 192 7.934 c.37.1.1 84404 3c8uA 208 8.640 1rz3A 201 8.910 c.37.1.6 98132 2z0hA 197 9.778 2j41A 207 9.893 1n2zA 245 10.44 c.92.2.2 79865 2g1iA 563 11.28 1nn5A 215 11.86 c.37.1.1 85892 2zgyA 320 12.29 2ccjA 205 13.24 2f1rA 171 14.51 3b9qA 302 14.89 2f2eA 146 15.32 a.4.5.69 132808 1qf9A 194 16.72 c.37.1.1 31848 1n4aA 252 16.86 c.92.2.2 85317 1rkbA 173 17.25 c.37.1.1 111854 1g6oA 330 17.72 c.37.1.11 32430 2pt7A 330 18.16 1zunB 434 18.20 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1pvdA 537 19.05 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2qt1A 207 19.67 1x6vA 630 20.13 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1sq5A 308 20.37 c.37.1.6 105882 2ak3A 226 20.88 c.37.1.1,g.41.2.1 31892,45193 1lv7A 257 21.27 c.37.1.20 78232 1y63A 184 21.90 c.37.1.1 116494 2ixeA 271 22.77 2an9A 207 22.98 c.37.1.1 127037 2pzeA 229 23.44 2ff7A 247 23.45 c.37.1.12 133377 1s96A 219 23.63 c.37.1.1 98740 1gtvA 214 26.55 c.37.1.1 70537 1bupA 386 26.69 c.55.1.1,c.55.1.1 33377,33378 2pmkA 243 28.90 2bbsA 290 30.15 2iyvA 184 31.76 c.37.1.2 137812 1m6jA 261 33.76 c.1.1.1 78693 1ukzA 203 35.23 c.37.1.1 31840 3be4A 217 35.57 1zpdA 568 36.52 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1e2kA 331 36.75 c.37.1.1 31854 1tca 317 36.88 2axpA 173 37.86 c.37.1.1 127497 2qy9A 309 38.38 1vhtA 218 38.48 c.37.1.1 100700 2yvuA 186 38.90 2cbzA 237 41.54 1knqA 175 42.56 c.37.1.17 72786 1qhfA 240 43.11 c.60.1.1 33960 1kv5A 250 44.14 c.1.1.1 73052 1n55A 251 44.51 c.1.1.1 80007 1jcfA 344 45.05 c.55.1.1,c.55.1.1 62878,62879 1hplA 449 45.32 b.12.1.2,c.69.1.19 23639,34787 1jfrA 262 46.93 c.69.1.16 34724 1odfA 290 47.66 c.37.1.6 92782 1mwmA 320 47.74 c.55.1.1,c.55.1.1 79580,79581 1neyA 247 48.44 c.1.1.1 80449 1zu4A 320 48.57 2eyuA 261 49.16 1yyaA 250 49.34 1r2rA 248 50.83 c.1.1.1 96875 1akyA 220 51.39 c.37.1.1,g.41.2.1 31896,45197 1kagA 173 52.34 c.37.1.2 72249 4tmkA 213 52.52 c.37.1.1 31930 1viaA 175 53.14 c.37.1.2 100754 1m1zA 513 53.69 c.26.2.1,d.153.1.1 78457,78458 1m5wA 243 54.08 c.1.24.1 84836 3c8dA 403 54.25 1bu8A 452 54.40 b.12.1.2,c.69.1.19 23647,34795 1a7jA 290 55.10 c.37.1.6 31952 2qorA 204 55.73 2qruA 274 56.25 2ihyA 279 57.69 1efdN 266 57.69 c.92.2.1 35597 2c31A 568 58.92 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1hpcA 131 59.34 b.84.1.1 28221 1jpkA 388 59.76 c.1.22.1 67026 2zdrA 349 60.69 2orwA 184 60.73 3bgaA 1010 61.40 2nxwA 565 61.52 2j27A 250 61.72 2qe9A 178 63.33 1ak2A 233 64.41 c.37.1.1,g.41.2.1 31894,45195 2dp3A 257 69.16 2b5dX 528 70.71 a.8.3.3,c.6.2.4 127886,127887 1bouA 139 71.39 a.88.1.1 18521 2grjA 192 73.10 1htwA 158 73.86 c.37.1.18 71083 2fx5A 258 76.01 1mx0A 472 76.04 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1yqtA 538 76.30 1xuuA 349 76.80 b.85.1.1,c.1.10.6 116067,116068 1kjwA 295 78.14 b.34.2.1,c.37.1.1 68643,68644 1sxjE 354 78.17 a.80.1.1,c.37.1.20 106089,106090 1ji0A 240 78.94 c.37.1.12 71665 1e8oA 85 80.93 d.49.1.1 38773 1xteA 154 81.92 d.189.1.1 116017 1o5xA 248 82.52 c.1.1.1 92528 2b20A 403 83.59 b.1.18.20,c.69.1.2 127685,127686 2it1A 362 86.08 2fswA 107 86.76 a.4.5.69 134042 3b9pA 297 87.01 1b0uA 262 87.69 c.37.1.12 32370