# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.2689 1in6A 334 0.3336 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 0.5220 a.4.5.11,c.37.1.20 62597,62598 1khtA 192 1.606 c.37.1.1 84401 1p5zB 263 2.644 c.37.1.1 87815 1n2zA 245 2.991 c.92.2.2 79865 2z0hA 197 3.683 2gzaA 361 3.890 1xjcA 169 3.948 c.37.1.10 115387 1np6A 174 4.314 c.37.1.10 85954 1ki9A 192 4.750 c.37.1.1 84404 2pt7A 330 4.835 1g6oA 330 4.968 c.37.1.11 32430 1bifA 469 5.150 c.37.1.7,c.60.1.4 31961,34003 3b9pA 297 7.777 2ccjA 205 8.517 2qjwA 176 8.637 1bif 469 8.693 2f1rA 171 9.338 1n4aA 252 10.11 c.92.2.2 85317 1sxjE 354 10.36 a.80.1.1,c.37.1.20 106089,106090 2p5tB 253 11.32 1ukz 203 11.81 1lv7A 257 12.04 c.37.1.20 78232 2oap1 511 12.39 1riiA 265 13.22 c.60.1.1 111807 2rhmA 193 13.27 1qhfA 240 13.30 c.60.1.1 33960 2o2gA 223 13.65 1nn5A 215 13.65 c.37.1.1 85892 3c8uA 208 14.77 1rz3A 201 14.82 c.37.1.6 98132 1xewX 182 17.82 c.37.1.12 115235 3bs4A 260 17.98 1htwA 158 18.15 c.37.1.18 71083 4tmkA 213 20.42 c.37.1.1 31930 2bjvA 265 20.72 1ukzA 203 21.25 c.37.1.1 31840 1zu4A 320 21.87 3be4A 217 22.13 2f2eA 146 22.25 a.4.5.69 132808 1akyA 220 22.68 c.37.1.1,g.41.2.1 31896,45197 2j41A 207 22.97 2ixeA 271 23.41 1yyaA 250 24.01 1e6cA 173 26.54 c.37.1.2 59296 2gxaA 274 26.69 2ak3A 226 26.94 c.37.1.1,g.41.2.1 31892,45193 1rj9A 304 27.87 a.24.13.1,c.37.1.10 97553,97554 2c42A 1231 28.02 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 3b9qA 302 28.05 2eyuA 261 28.84 1e4yA 214 29.65 c.37.1.1,g.41.2.1 31901,45181 2ff7A 247 29.93 c.37.1.12 133377 1gvnB 287 29.99 c.37.1.21 76354 1p6xA 334 30.95 c.37.1.1 94195 2hhjA 267 31.41 c.60.1.1 136497 2r44A 331 31.76 1imjA 210 31.94 c.69.1.23 71246 1viaA 175 32.13 c.37.1.2 100754 1r2rA 248 33.98 c.1.1.1 96875 1x6vA 630 34.13 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pzeA 229 35.70 1m6jA 261 35.72 c.1.1.1 78693 2bonA 332 37.82 1qf9A 194 38.02 c.37.1.1 31848 1zpdA 568 39.64 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1of1A 376 40.30 c.37.1.1 103924 1neyA 247 40.79 c.1.1.1 80449 1n55A 251 41.14 c.1.1.1 80007 1ak2A 233 42.06 c.37.1.1,g.41.2.1 31894,45195 1n8fA 350 42.14 c.1.10.4 85397 2a5yB 549 42.26 1g8pA 350 42.63 c.37.1.20 60376 1kjwA 295 44.15 b.34.2.1,c.37.1.1 68643,68644 1kgdA 180 44.30 c.37.1.1 68582 1e2kA 331 44.66 c.37.1.1 31854 2qm8A 337 45.31 2ob3A 330 45.95 1o5xA 248 46.39 c.1.1.1 92528 2qt1A 207 46.55 1tca 317 46.99 2j27A 250 47.22 2qy9A 309 47.67 2p74A 263 47.69 2pmkA 243 47.79 2vc7A 314 47.91 1yr2A 741 48.65 1ly1A 181 49.21 c.37.1.1 74334 1gtvA 214 49.36 c.37.1.1 70537 2cbzA 237 50.90 2bklA 695 51.03 2zdrA 349 51.86 1b9bA 255 54.83 c.1.1.1 28531 2dp3A 257 55.17 1c0pA 363 55.43 c.4.1.2,d.16.1.3 30647,37934 1kngA 156 55.95 c.47.1.10 72777 1odfA 290 56.02 c.37.1.6 92782 1kv5A 250 56.24 c.1.1.1 73052 2yqcA 486 56.47 1mo0A 275 57.22 c.1.1.1 79329 2q8pA 260 57.24 1ltqA 301 58.20 c.108.1.9,c.37.1.1 78208,78209 1y63A 184 58.42 c.37.1.1 116494 2an9A 207 58.53 c.37.1.1 127037 1gmlA 178 59.34 c.8.5.2 70273 1gl6A 436 59.79 c.37.1.11 70259 2hf9A 226 60.26 1m1zA 513 60.28 c.26.2.1,d.153.1.1 78457,78458 2vp4A 230 60.92 1f6bA 198 62.30 c.37.1.8 64986 1ypvA 313 62.82 1xuuA 349 64.94 b.85.1.1,c.1.10.6 116067,116068 1f0kA 364 65.10 c.87.1.2 35465 2qw5A 335 68.61 2hu5A 582 70.07 b.69.7.2,c.69.1.33 136763,136764 2c31A 568 70.11 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2nq2C 253 70.44 1v7zA 260 71.09 c.125.1.1 100488 1mwmA 320 77.14 c.55.1.1,c.55.1.1 79580,79581 2og1A 286 78.15 2bbsA 290 80.17 2puhA 286 80.85 2qulA 290 81.66 2ikqA 270 82.54 1r3sA 367 85.61 c.1.22.1 96963 1xx6A 191 86.66 c.37.1.24,g.39.1.14 116139,116140 1qqqA 264 88.05 d.117.1.1 40931