# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.5483 a.4.5.11,c.37.1.20 62601,62602 2oap1 511 0.6573 2pbrA 195 0.9577 1khtA 192 1.868 c.37.1.1 84401 1lv7A 257 3.220 c.37.1.20 78232 2qruA 274 3.989 1n2zA 245 4.169 c.92.2.2 79865 1f0kA 364 4.487 c.87.1.2 35465 1xjcA 169 4.804 c.37.1.10 115387 2j41A 207 5.098 2z0hA 197 5.328 1p5zB 263 5.435 c.37.1.1 87815 2ccjA 205 6.057 2pt7A 330 6.222 1e4yA 214 6.561 c.37.1.1,g.41.2.1 31901,45181 1ki9A 192 6.892 c.37.1.1 84404 1gl6A 436 6.899 c.37.1.11 70259 2hhjA 267 7.132 c.60.1.1 136497 1sxjE 354 7.412 a.80.1.1,c.37.1.20 106089,106090 2uvfA 608 7.739 1n4aA 252 8.222 c.92.2.2 85317 1g6oA 330 9.116 c.37.1.11 32430 4tmkA 213 9.555 c.37.1.1 31930 2rhmA 193 9.557 2p5tB 253 9.714 3b9pA 297 9.868 1qhfA 240 11.20 c.60.1.1 33960 2gxaA 274 11.30 3b5qA 482 11.57 2i5iA 263 12.22 2qjwA 176 12.35 1ukz 203 13.97 2ebsA 789 14.36 1c0pA 363 14.64 c.4.1.2,d.16.1.3 30647,37934 2gzaA 361 14.77 2o5vA 359 14.83 2qt1A 207 16.02 2axpA 173 16.36 c.37.1.1 127497 2o2gA 223 16.71 3bs4A 260 17.38 1ukzA 203 17.55 c.37.1.1 31840 3be4A 217 17.60 1nn5A 215 17.87 c.37.1.1 85892 2ak3A 226 19.54 c.37.1.1,g.41.2.1 31892,45193 2bklA 695 19.85 2f1rA 171 20.34 1hjsA 332 21.43 c.1.8.3 83492 1nrwA 288 21.72 c.108.1.10 86128 2eu8A 216 22.04 1tca 317 22.10 2hfkA 319 22.87 1b0uA 262 23.54 c.37.1.12 32370 1e6cA 173 24.21 c.37.1.2 59296 1in4A 334 24.48 a.4.5.11,c.37.1.20 62597,62598 2qy9A 309 24.56 2ixeA 271 24.72 1a0cA 438 26.10 c.1.15.3 29529 2bonA 332 26.59 2ocgA 254 26.99 1riiA 265 27.32 c.60.1.1 111807 2eyuA 261 27.43 2f2eA 146 27.61 a.4.5.69 132808 1akyA 220 28.66 c.37.1.1,g.41.2.1 31896,45197 1orvA 728 28.94 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 29.21 2an9A 207 30.69 c.37.1.1 127037 1np6A 174 30.69 c.37.1.10 85954 2qgnA 322 31.34 2nx9A 464 31.69 3b40A 417 31.93 2q8pA 260 32.13 1zu4A 320 32.20 2e9xC 219 32.21 2nxwA 565 32.30 1ju2A 536 32.60 c.3.1.2,d.16.1.1 77169,77170 2yvtA 260 32.77 1l8aA 886 33.38 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1d2nA 272 34.07 c.37.1.20 32428 2pzeA 229 34.56 1a0dA 440 34.77 c.1.15.3 29533 2qorA 204 34.88 1ex7A 186 35.77 c.37.1.1 59537 1rz3A 201 36.17 c.37.1.6 98132 2r44A 331 36.28 1s96A 219 36.45 c.37.1.1 98740 2yvuA 186 36.58 3bosA 242 37.10 2bjvA 265 38.69 1ly1A 181 38.77 c.37.1.1 74334 1vb3A 428 38.79 c.79.1.1 119942 1imjA 210 38.98 c.69.1.23 71246 2z1aA 552 39.05 1auk 489 39.39 2g1iA 563 41.57 1f6bA 198 42.29 c.37.1.8 64986 1viaA 175 44.20 c.37.1.2 100754 1xewX 182 44.24 c.37.1.12 115235 2bbsA 290 45.35 2a5yB 549 46.32 1qf9A 194 46.67 c.37.1.1 31848 1r3sA 367 46.69 c.1.22.1 96963 2qtcA 886 47.16 1ak2A 233 47.59 c.37.1.1,g.41.2.1 31894,45195 2f9lA 199 47.89 c.37.1.8 133166 2q3fA 181 48.12 2ax4A 198 48.49 1kgdA 180 50.00 c.37.1.1 68582 1ozhA 566 50.61 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1gg4A 452 50.62 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1y63A 184 51.00 c.37.1.1 116494 2ikqA 270 52.18 2p74A 263 52.93 1phpA 394 53.13 c.86.1.1 35452 2pujA 286 53.67 2pmkA 243 54.78 2h0qA 261 55.44 2nq2C 253 55.57 1b6g 310 56.20 3b9qA 302 56.31 1htwA 158 56.62 c.37.1.18 71083 1bsgA 266 56.78 e.3.1.1 42729 3bijA 285 57.57 2phzA 311 59.80 2oxnA 340 60.24 2chuA 296 60.67 c.92.2.4 130485 1odfA 290 61.18 c.37.1.6 92782 1yyaA 250 61.45 1ouvA 273 61.56 a.118.18.1 93570 2vp4A 230 61.70 1v7zA 260 62.07 c.125.1.1 100488 1mnaA 298 62.72 c.69.1.22 79322 2ax3A 502 62.92 c.72.1.4,c.104.1.1 127477,127478 2higA 487 63.55 2gzxA 265 63.80 1h65A 270 63.98 c.37.1.8 65640 1r2rA 248 64.57 c.1.1.1 96875 2yzsA 315 64.84 1gmlA 178 65.68 c.8.5.2 70273 2vc7A 314 65.74 1ji0A 240 66.20 c.37.1.12 71665 1x6vA 630 66.29 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qw5A 335 66.47 1g8mA 593 66.84 c.24.1.3,c.97.1.4 60371,60372 7odcA 424 67.05 b.49.2.3,c.1.6.1 26488,28650 1neyA 247 67.56 c.1.1.1 80449 2ff7A 247 68.31 c.37.1.12 133377 1g8pA 350 68.59 c.37.1.20 60376 2j3mA 572 68.82 1a99A 344 68.82 c.94.1.1 35812 2c42A 1231 69.71 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1ufoA 238 70.11 c.69.1.27 99344 2cbzA 237 70.78 1im8A 244 71.80 c.66.1.14 66212 2z8fA 412 71.97 2p9bA 458 72.51 1u04A 771 72.87 b.34.14.1,c.55.3.10 107539,107540 2qmqA 286 74.22 1m1zA 513 74.41 c.26.2.1,d.153.1.1 78457,78458 2cdnA 201 74.52 c.37.1.1 130289 1w7jA 795 74.57 b.34.3.1,c.37.1.9 120688,120689 2og2A 359 75.03 1p0kA 349 76.24 c.1.4.1 87648 1pvdA 537 76.53 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1jpkA 388 77.36 c.1.22.1 67026 1gvnB 287 77.67 c.37.1.21 76354 1qqqA 264 77.75 d.117.1.1 40931 2pezA 179 78.65 2qi9C 249 79.58 1ev5A 264 79.66 d.117.1.1 40935 2hu5A 582 79.86 b.69.7.2,c.69.1.33 136763,136764 1zc6A 305 79.89 c.55.1.5,c.55.1.5 124888,124889 1n55A 251 80.14 c.1.1.1 80007 1jcfA 344 80.58 c.55.1.1,c.55.1.1 62878,62879 2z43A 324 80.73 2c29D 337 81.86 1ydgA 211 82.10 c.23.5.8 116614 1xtqA 177 82.14 c.37.1.8 122297 1rkbA 173 83.27 c.37.1.1 111854 1m6jA 261 84.08 c.1.1.1 78693 1gky 187 84.42 3bdvA 191 88.37 2b7aA 293 89.17 2j27A 250 89.74