# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.1356 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.2223 1in4A 334 0.4014 a.4.5.11,c.37.1.20 62597,62598 1p5zB 263 1.106 c.37.1.1 87815 1khtA 192 1.256 c.37.1.1 84401 1xjcA 169 1.797 c.37.1.10 115387 1n2zA 245 2.588 c.92.2.2 79865 2z0hA 197 3.320 1np6A 174 3.604 c.37.1.10 85954 1ki9A 192 3.909 c.37.1.1 84404 1bifA 469 3.991 c.37.1.7,c.60.1.4 31961,34003 2pt7A 330 4.584 2gzaA 361 4.673 1g6oA 330 4.675 c.37.1.11 32430 1bif 469 6.141 2qjwA 176 6.639 2f1rA 171 6.915 2c42A 1231 7.431 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 3b9pA 297 9.874 2rhmA 193 9.904 2o2gA 223 10.45 2ccjA 205 10.60 1n4aA 252 10.89 c.92.2.2 85317 1nn5A 215 10.97 c.37.1.1 85892 3c8uA 208 11.33 1lv7A 257 13.00 c.37.1.20 78232 2oap1 511 13.01 1sxjE 354 14.33 a.80.1.1,c.37.1.20 106089,106090 1rz3A 201 15.39 c.37.1.6 98132 2p5tB 253 16.94 1ukz 203 17.75 2f2eA 146 18.24 a.4.5.69 132808 2r44A 331 18.37 2eyuA 261 18.66 2ff7A 247 18.67 c.37.1.12 133377 2bjvA 265 18.93 1akyA 220 19.03 c.37.1.1,g.41.2.1 31896,45197 2ixeA 271 20.01 1htwA 158 20.82 c.37.1.18 71083 4tmkA 213 21.18 c.37.1.1 31930 1e6cA 173 21.22 c.37.1.2 59296 3be4A 217 21.34 1ukzA 203 21.48 c.37.1.1 31840 1yyaA 250 21.52 1riiA 265 22.05 c.60.1.1 111807 2ak3A 226 22.07 c.37.1.1,g.41.2.1 31892,45193 2j41A 207 22.29 3bs4A 260 23.11 1qhfA 240 24.25 c.60.1.1 33960 1imjA 210 24.81 c.69.1.23 71246 2pzeA 229 25.40 1xewX 182 25.57 c.37.1.12 115235 2gxaA 274 26.24 2qm8A 337 27.06 1e4yA 214 27.56 c.37.1.1,g.41.2.1 31901,45181 1kgdA 180 28.13 c.37.1.1 68582 1zu4A 320 29.21 1qf9A 194 29.81 c.37.1.1 31848 2a5yB 549 29.84 2pmkA 243 30.30 1v7zA 260 31.29 c.125.1.1 100488 2hf9A 226 31.42 3b9qA 302 31.54 1g8pA 350 31.85 c.37.1.20 60376 1gtvA 214 33.01 c.37.1.1 70537 1p6xA 334 33.21 c.37.1.1 94195 2qt1A 207 33.37 2cbzA 237 33.64 1viaA 175 34.48 c.37.1.2 100754 1ly1A 181 34.88 c.37.1.1 74334 1of1A 376 36.57 c.37.1.1 103924 1n8fA 350 37.64 c.1.10.4 85397 1ltqA 301 37.81 c.108.1.9,c.37.1.1 78208,78209 1x6vA 630 39.96 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1m6jA 261 41.40 c.1.1.1 78693 1njgA 250 41.78 c.37.1.20 85785 1m1zA 513 41.85 c.26.2.1,d.153.1.1 78457,78458 1ak2A 233 41.86 c.37.1.1,g.41.2.1 31894,45195 2qy9A 309 41.91 1tca 317 42.87 2hhjA 267 43.15 c.60.1.1 136497 2ob3A 330 43.23 2an9A 207 44.25 c.37.1.1 127037 1rj9A 304 44.46 a.24.13.1,c.37.1.10 97553,97554 1e2kA 331 45.55 c.37.1.1 31854 1gmlA 178 46.02 c.8.5.2 70273 1neyA 247 47.08 c.1.1.1 80449 1r2rA 248 48.19 c.1.1.1 96875 2q8pA 260 48.29 1qqqA 264 49.39 d.117.1.1 40931 1zpdA 568 49.59 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2bonA 332 49.75 2ikqA 270 49.83 2hu5A 582 51.18 b.69.7.2,c.69.1.33 136763,136764 2bklA 695 51.84 1yr2A 741 52.25 2g1iA 563 52.73 1odfA 290 53.15 c.37.1.6 92782 1r3sA 367 53.59 c.1.22.1 96963 2yqcA 486 54.32 2vc7A 314 54.90 1n55A 251 55.92 c.1.1.1 80007 2bbsA 290 56.47 1bkpA 278 57.54 d.117.1.1 41029 1o5xA 248 57.65 c.1.1.1 92528 2p74A 263 57.74 2nq2C 253 57.99 1ypvA 313 60.93 2j27A 250 60.96 1mwmA 320 61.05 c.55.1.1,c.55.1.1 79580,79581 1y63A 184 62.03 c.37.1.1 116494 1b9bA 255 62.07 c.1.1.1 28531 1ev5A 264 65.04 d.117.1.1 40935 1xx6A 191 65.67 c.37.1.24,g.39.1.14 116139,116140 1f0kA 364 65.68 c.87.1.2 35465 2zdrA 349 66.12 1kjwA 295 67.08 b.34.2.1,c.37.1.1 68643,68644 2zgyA 320 67.37 2vp4A 230 68.67 2dp3A 257 69.09 2g8mA 264 69.51 2c31A 568 69.80 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2vbfA 570 71.39 1gvnB 287 71.49 c.37.1.21 76354 1zin 217 71.50 1u0jA 267 72.06 c.37.1.20 107546 1kv5A 250 73.59 c.1.1.1 73052 2qw5A 335 74.15 1ufoA 238 75.03 c.69.1.27 99344 1b6g 310 75.17 1kngA 156 76.05 c.47.1.10 72777 1vkrA 125 77.27 c.44.2.1 108689 2pcjA 224 77.60 1yixA 265 78.58 c.1.9.12 123371 1ye8A 178 78.71 c.37.1.11 123010 1gl6A 436 79.61 c.37.1.11 70259 2chuA 296 79.79 c.92.2.4 130485 1knqA 175 80.60 c.37.1.17 72786 2a5lA 200 81.13 c.23.5.8 126176 1w44A 331 81.70 c.37.1.11 114147 1a7jA 290 81.99 c.37.1.6 31952 2og1A 286 82.49 1b0uA 262 82.82 c.37.1.12 32370 2cxxA 190 83.76 c.37.1.8 131013 1zuhA 168 84.52 2b20A 403 84.70 b.1.18.20,c.69.1.2 127685,127686 2q0oA 236 85.24 1d2nA 272 85.64 c.37.1.20 32428 2c9oA 456 86.31 1zzmA 259 87.17 c.1.9.12 125911 2g8oA 264 88.57 d.117.1.1 134779 2ejaA 338 89.19 1mo0A 275 89.29 c.1.1.1 79329 2puhA 286 89.51