# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.5118 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.7778 1in4A 334 1.211 a.4.5.11,c.37.1.20 62597,62598 2z0hA 197 1.522 1khtA 192 3.449 c.37.1.1 84401 2qjwA 176 5.765 1p5zB 263 6.395 c.37.1.1 87815 1ki9A 192 6.524 c.37.1.1 84404 1np6A 174 7.164 c.37.1.10 85954 2ccjA 205 7.358 1n2zA 245 8.022 c.92.2.2 79865 4tmkA 213 8.675 c.37.1.1 31930 2bklA 695 8.687 1xjcA 169 9.540 c.37.1.10 115387 2f1rA 171 9.816 1lv7A 257 9.890 c.37.1.20 78232 2gzaA 361 9.96 2j41A 207 11.13 2o2gA 223 11.87 2r44A 331 11.92 1e4yA 214 11.97 c.37.1.1,g.41.2.1 31901,45181 1ukzA 203 12.33 c.37.1.1 31840 2gxaA 274 13.14 2p5tB 253 13.38 1ukz 203 13.56 1e6cA 173 13.60 c.37.1.2 59296 1f6bA 198 14.13 c.37.1.8 64986 1akyA 220 14.26 c.37.1.1,g.41.2.1 31896,45197 1yr2A 741 14.40 1njgA 250 15.06 c.37.1.20 85785 1gvnB 287 15.27 c.37.1.21 76354 2rhmA 193 15.58 1qhfA 240 15.77 c.60.1.1 33960 3b9pA 297 16.19 1sxjE 354 16.27 a.80.1.1,c.37.1.20 106089,106090 1riiA 265 16.41 c.60.1.1 111807 1g8pA 350 17.25 c.37.1.20 60376 1bifA 469 17.45 c.37.1.7,c.60.1.4 31961,34003 2hu5A 582 17.52 b.69.7.2,c.69.1.33 136763,136764 1xewX 182 18.23 c.37.1.12 115235 2p35A 259 20.05 1e5dA 402 21.76 c.23.5.1,d.157.1.3 31208,42061 1bif 469 22.33 3be4A 217 22.49 1n4aA 252 22.74 c.92.2.2 85317 1zu4A 320 23.02 2eyuA 261 23.83 2bonA 332 24.96 2bjvA 265 26.77 2c42A 1231 27.08 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1viaA 175 29.62 c.37.1.2 100754 1rj9A 304 30.14 a.24.13.1,c.37.1.10 97553,97554 1tca 317 31.27 1ypvA 313 32.26 1yyaA 250 32.94 2f2eA 146 36.15 a.4.5.69 132808 2oap1 511 38.23 1rz3A 201 38.96 c.37.1.6 98132 1qqqA 264 39.65 d.117.1.1 40931 2p67A 341 40.04 1b6g 310 40.48 2g8oA 264 40.98 d.117.1.1 134779 2e9xC 219 42.74 1y63A 184 43.05 c.37.1.1 116494 1nn5A 215 43.81 c.37.1.1 85892 2qgqA 304 44.57 2pt7A 330 45.18 2g8mA 264 45.24 2hhjA 267 46.35 c.60.1.1 136497 3c8uA 208 47.50 3bh0A 315 47.65 2orwA 184 49.52 1odfA 290 49.68 c.37.1.6 92782 1d2nA 272 49.85 c.37.1.20 32428 2pzeA 229 50.22 2hfkA 319 50.37 2p74A 263 51.69 3b9qA 302 52.22 3bs4A 260 52.27 2ak3A 226 52.69 c.37.1.1,g.41.2.1 31892,45193 1bkpA 278 52.75 d.117.1.1 41029 1htwA 158 54.28 c.37.1.18 71083 1m6jA 261 56.05 c.1.1.1 78693 1ak2A 233 58.06 c.37.1.1,g.41.2.1 31894,45195 1r3sA 367 58.74 c.1.22.1 96963 2ixeA 271 59.33 3bosA 242 59.64 1g6oA 330 60.55 c.37.1.11 32430 1kgdA 180 61.11 c.37.1.1 68582 1hplA 449 63.62 b.12.1.2,c.69.1.19 23639,34787 2fn4A 181 63.75 c.37.1.8 133806 1r2rA 248 64.32 c.1.1.1 96875 2qm0A 275 64.34 1ev5A 264 66.34 d.117.1.1 40935 1o5xA 248 66.96 c.1.1.1 92528 1pv1A 299 67.88 c.69.1.34 111639 1gl6A 436 68.02 c.37.1.11 70259 1neyA 247 71.11 c.1.1.1 80449 1e2kA 331 72.67 c.37.1.1 31854 2og1A 286 72.80 2zdrA 349 73.57 1xuuA 349 75.51 b.85.1.1,c.1.10.6 116067,116068 2puhA 286 75.56 1bsgA 266 76.30 e.3.1.1 42729 1j8mF 297 76.97 a.24.13.1,c.37.1.10 62742,62743 2c31A 568 78.43 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1p0kA 349 78.91 c.1.4.1 87648 2ikqA 270 79.18 1auk 489 81.22 1bu8A 452 82.41 b.12.1.2,c.69.1.19 23647,34795 2oqyA 391 82.43 1imjA 210 83.71 c.69.1.23 71246 1orvA 728 86.40 b.70.3.1,c.69.1.24 87354,87355 1ydgA 211 86.80 c.23.5.8 116614 2an9A 207 87.69 c.37.1.1 127037 2ihyA 279 88.90 2aamA 309 89.56 c.1.8.15 126489