# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.2647 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.2926 1in4A 334 1.028 a.4.5.11,c.37.1.20 62597,62598 2z0hA 197 1.799 2gzaA 361 2.485 2ccjA 205 3.121 2f1rA 171 3.542 1p5zB 263 3.549 c.37.1.1 87815 1bifA 469 3.779 c.37.1.7,c.60.1.4 31961,34003 1np6A 174 3.933 c.37.1.10 85954 1n2zA 245 4.043 c.92.2.2 79865 1khtA 192 4.622 c.37.1.1 84401 1xjcA 169 5.025 c.37.1.10 115387 1ki9A 192 5.182 c.37.1.1 84404 1ukz 203 6.454 1ukzA 203 6.532 c.37.1.1 31840 2p5tB 253 6.866 1sxjE 354 7.564 a.80.1.1,c.37.1.20 106089,106090 2rhmA 193 7.629 1nn5A 215 7.670 c.37.1.1 85892 2qjwA 176 8.781 1riiA 265 9.858 c.60.1.1 111807 1g6oA 330 10.04 c.37.1.11 32430 1njgA 250 10.18 c.37.1.20 85785 3be4A 217 10.25 1n4aA 252 10.33 c.92.2.2 85317 3b9pA 297 11.02 1xewX 182 11.25 c.37.1.12 115235 1qhfA 240 11.59 c.60.1.1 33960 2pt7A 330 11.77 3b9qA 302 13.37 4tmkA 213 14.25 c.37.1.1 31930 2orwA 184 14.99 1f6bA 198 15.65 c.37.1.8 64986 1e4yA 214 15.78 c.37.1.1,g.41.2.1 31901,45181 2c42A 1231 16.56 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1bif 469 18.17 1zu4A 320 19.07 1e6cA 173 20.23 c.37.1.2 59296 2oap1 511 20.91 2bklA 695 21.31 3c8uA 208 21.35 1qqqA 264 21.42 d.117.1.1 40931 2pzeA 229 21.71 2bjvA 265 22.70 1viaA 175 23.94 c.37.1.2 100754 2j41A 207 23.95 2pezA 179 24.96 1p6xA 334 25.22 c.37.1.1 94195 2g8oA 264 25.69 d.117.1.1 134779 1e2kA 331 25.88 c.37.1.1 31854 2gxaA 274 26.18 2g8mA 264 26.71 2hf9A 226 27.29 1ev5A 264 28.19 d.117.1.1 40935 1rz3A 201 28.46 c.37.1.6 98132 2o2gA 223 28.57 1rj9A 304 28.88 a.24.13.1,c.37.1.10 97553,97554 2eyuA 261 28.94 2f2eA 146 30.37 a.4.5.69 132808 2yvuA 186 30.40 1odfA 290 30.82 c.37.1.6 92782 2ixeA 271 31.08 1lv7A 257 31.40 c.37.1.20 78232 2hhjA 267 31.83 c.60.1.1 136497 1of1A 376 32.74 c.37.1.1 103924 2cbzA 237 33.20 1r3sA 367 34.16 c.1.22.1 96963 1b6g 310 34.83 2vc7A 314 35.96 1akyA 220 38.65 c.37.1.1,g.41.2.1 31896,45197 2bonA 332 39.30 1yr2A 741 40.20 2vp4A 230 40.21 2ff7A 247 40.25 c.37.1.12 133377 2qy9A 309 40.41 1gvnB 287 41.03 c.37.1.21 76354 2e9xC 219 41.78 1imjA 210 42.24 c.69.1.23 71246 2nq2C 253 42.47 1yyaA 250 44.16 2p74A 263 45.73 1y63A 184 46.18 c.37.1.1 116494 1xx6A 191 47.16 c.37.1.24,g.39.1.14 116139,116140 2hu5A 582 47.38 b.69.7.2,c.69.1.33 136763,136764 2qm8A 337 47.56 2bbsA 290 48.83 1tca 317 49.38 1htwA 158 49.53 c.37.1.18 71083 1hplA 449 51.19 b.12.1.2,c.69.1.19 23639,34787 1j8eA 44 52.98 g.12.1.1 66437 1bu8A 452 53.59 b.12.1.2,c.69.1.19 23647,34795 1x6vA 630 56.15 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bkpA 278 57.44 d.117.1.1 41029 1n8fA 350 57.70 c.1.10.4 85397 2pmkA 243 58.42 1c0pA 363 58.51 c.4.1.2,d.16.1.3 30647,37934 2an9A 207 59.89 c.37.1.1 127037 1orvA 728 64.36 b.70.3.1,c.69.1.24 87354,87355 2ikqA 270 64.96 1ltqA 301 65.60 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 66.44 c.37.1.1 74334 2ak3A 226 67.12 c.37.1.1,g.41.2.1 31892,45193 1r2rA 248 67.30 c.1.1.1 96875 1kdoA 227 68.12 c.37.1.1 68478 1zunB 434 68.51 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 3bh0A 315 69.05 2r44A 331 69.83 1o5xA 248 75.59 c.1.1.1 92528 2c31A 568 75.69 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1jcfA 344 77.06 c.55.1.1,c.55.1.1 62878,62879 2ax4A 198 79.43 1gtvA 214 79.50 c.37.1.1 70537 2chuA 296 81.50 c.92.2.4 130485 1ydgA 211 81.77 c.23.5.8 116614 1v7zA 260 81.87 c.125.1.1 100488 1qf9A 194 83.87 c.37.1.1 31848 1kngA 156 83.91 c.47.1.10 72777 2ihyA 279 84.16 1d2nA 272 84.24 c.37.1.20 32428 1e58A 249 85.62 c.60.1.1 59262 3c4vA 426 86.98 2q8pA 260 87.45 1kgdA 180 87.68 c.37.1.1 68582 1vkrA 125 89.02 c.44.2.1 108689 1zin 217 89.34 1b6gA 310 89.45 c.69.1.8 34661 1s96A 219 89.50 c.37.1.1 98740