# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1in6A 334 0.2148 a.4.5.11,c.37.1.20 62601,62602 2pbrA 195 0.3669 1in4A 334 0.6284 a.4.5.11,c.37.1.20 62597,62598 2z0hA 197 2.527 1xjcA 169 2.950 c.37.1.10 115387 1np6A 174 3.642 c.37.1.10 85954 2qjwA 176 3.948 1khtA 192 4.109 c.37.1.1 84401 1p5zB 263 4.264 c.37.1.1 87815 1sxjE 354 4.285 a.80.1.1,c.37.1.20 106089,106090 2f1rA 171 4.591 2gzaA 361 4.919 1n2zA 245 4.945 c.92.2.2 79865 1ki9A 192 5.320 c.37.1.1 84404 1bifA 469 6.708 c.37.1.7,c.60.1.4 31961,34003 2pt7A 330 7.154 1ukz 203 9.047 1nn5A 215 9.706 c.37.1.1 85892 2o2gA 223 10.45 1n4aA 252 10.57 c.92.2.2 85317 4tmkA 213 10.92 c.37.1.1 31930 1riiA 265 11.00 c.60.1.1 111807 2ccjA 205 11.48 1g6oA 330 11.55 c.37.1.11 32430 2bjvA 265 11.75 1xewX 182 11.87 c.37.1.12 115235 1njgA 250 12.64 c.37.1.20 85785 3be4A 217 12.78 2rhmA 193 13.70 2p5tB 253 14.06 2c42A 1231 14.53 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2r44A 331 15.30 1zu4A 320 15.57 2orwA 184 16.12 1f6bA 198 16.43 c.37.1.8 64986 1p6xA 334 16.78 c.37.1.1 94195 1qhfA 240 17.53 c.60.1.1 33960 2j41A 207 17.66 1ukzA 203 18.19 c.37.1.1 31840 2ff7A 247 19.18 c.37.1.12 133377 3c8uA 208 19.18 1e4yA 214 19.31 c.37.1.1,g.41.2.1 31901,45181 2f2eA 146 19.54 a.4.5.69 132808 2pezA 179 20.72 2pzeA 229 20.92 1gvnB 287 21.12 c.37.1.21 76354 1rz3A 201 21.45 c.37.1.6 98132 2ixeA 271 21.73 2oap1 511 23.39 2gxaA 274 24.07 2vp4A 230 24.17 3b9pA 297 24.25 2pmkA 243 24.81 1htwA 158 25.57 c.37.1.18 71083 2yvuA 186 25.61 2bonA 332 27.05 1odfA 290 28.16 c.37.1.6 92782 2eyuA 261 28.54 3b9qA 302 28.64 1e6cA 173 29.36 c.37.1.2 59296 2cbzA 237 29.81 1akyA 220 30.24 c.37.1.1,g.41.2.1 31896,45197 2hf9A 226 30.59 2g8mA 264 30.64 2vc7A 314 30.65 1lv7A 257 31.00 c.37.1.20 78232 1rj9A 304 31.31 a.24.13.1,c.37.1.10 97553,97554 2bklA 695 31.81 1bif 469 32.78 2hhjA 267 32.95 c.60.1.1 136497 2g8oA 264 33.26 d.117.1.1 134779 1yyaA 250 35.07 1tca 317 35.39 1qqqA 264 35.85 d.117.1.1 40931 1r3sA 367 38.53 c.1.22.1 96963 1yr2A 741 39.17 1j8mF 297 41.58 a.24.13.1,c.37.1.10 62742,62743 1viaA 175 41.67 c.37.1.2 100754 2an9A 207 41.68 c.37.1.1 127037 1r2rA 248 42.73 c.1.1.1 96875 1bu8A 452 42.78 b.12.1.2,c.69.1.19 23647,34795 3bs4A 260 43.03 2bbsA 290 43.85 1xx6A 191 43.86 c.37.1.24,g.39.1.14 116139,116140 1imjA 210 44.24 c.69.1.23 71246 1hplA 449 46.39 b.12.1.2,c.69.1.19 23639,34787 2ak3A 226 46.40 c.37.1.1,g.41.2.1 31892,45193 1d2nA 272 46.62 c.37.1.20 32428 1ji0A 240 46.81 c.37.1.12 71665 2qm8A 337 48.09 2hu5A 582 48.34 b.69.7.2,c.69.1.33 136763,136764 1o5xA 248 49.36 c.1.1.1 92528 1g8pA 350 49.84 c.37.1.20 60376 1vplA 256 50.91 c.37.1.12 113966 3bosA 242 50.98 2e9xC 219 51.10 1ypvA 313 51.23 1m6jA 261 53.16 c.1.1.1 78693 1m1zA 513 53.84 c.26.2.1,d.153.1.1 78457,78458 1neyA 247 54.77 c.1.1.1 80449 1y63A 184 56.60 c.37.1.1 116494 2zdrA 349 57.69 1bkpA 278 57.71 d.117.1.1 41029 1ydgA 211 59.25 c.23.5.8 116614 1a7jA 290 59.48 c.37.1.6 31952 1ev5A 264 59.74 d.117.1.1 40935 1x6vA 630 59.98 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1s96A 219 61.62 c.37.1.1 98740 1yqtA 538 62.41 2ax4A 198 63.25 1n8fA 350 64.27 c.1.10.4 85397 2nq2C 253 64.31 3bh0A 315 65.18 2q8pA 260 66.06 1e9rA 437 66.57 c.37.1.11 64827 1e2kA 331 67.71 c.37.1.1 31854 2p67A 341 68.60 1gtvA 214 69.28 c.37.1.1 70537 1jcfA 344 70.92 c.55.1.1,c.55.1.1 62878,62879 2qy9A 309 72.83 2it1A 362 73.48 2ob3A 330 73.95 2ejaA 338 75.37 1b6g 310 75.52 1pv1A 299 77.61 c.69.1.34 111639 2c31A 568 77.93 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1knqA 175 78.31 c.37.1.17 72786 1b0uA 262 78.69 c.37.1.12 32370 2ihyA 279 78.88 1v7zA 260 80.45 c.125.1.1 100488 1of1A 376 80.94 c.37.1.1 103924 1n55A 251 81.02 c.1.1.1 80007 2q0oA 236 81.30 2gzxA 265 83.79 1kdoA 227 83.84 c.37.1.1 68478 2dp3A 257 84.01 2cdnA 201 84.36 c.37.1.1 130289 1qf9A 194 85.19 c.37.1.1 31848 1jpkA 388 85.41 c.1.22.1 67026 1gl6A 436 85.49 c.37.1.11 70259 2qgqA 304 85.56 1kv5A 250 87.06 c.1.1.1 73052 1e5dA 402 88.18 c.23.5.1,d.157.1.3 31208,42061 1e58A 249 88.30 c.60.1.1 59262 2j27A 250 89.07