# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.4172 2rhmA 193 0.8024 3b9qA 302 2.151 1p5zB 263 2.187 c.37.1.1 87815 2yvuA 186 2.288 1in6A 334 3.051 a.4.5.11,c.37.1.20 62601,62602 2p5tB 253 3.384 1np6A 174 3.780 c.37.1.10 85954 2qjwA 176 3.901 2r85A 334 4.653 1xjcA 169 5.155 c.37.1.10 115387 2gzaA 361 5.187 2ccjA 205 5.907 1qf9A 194 7.996 c.37.1.1 31848 1zu4A 320 8.375 1kgdA 180 8.830 c.37.1.1 68582 1in4A 334 9.003 a.4.5.11,c.37.1.20 62597,62598 2o2gA 223 9.066 2pezA 179 9.595 1bif 469 10.55 1rj9A 304 11.93 a.24.13.1,c.37.1.10 97553,97554 1of1A 376 12.07 c.37.1.1 103924 2z0hA 197 12.48 1y63A 184 13.01 c.37.1.1 116494 2qy9A 309 14.72 1p6xA 334 14.83 c.37.1.1 94195 2yvtA 260 15.42 2ff7A 247 16.30 c.37.1.12 133377 2iyvA 184 16.34 c.37.1.2 137812 1ukzA 203 16.81 c.37.1.1 31840 3c2qA 345 17.05 1viaA 175 17.09 c.37.1.2 100754 1nn5A 215 17.33 c.37.1.1 85892 1ki9A 192 17.65 c.37.1.1 84404 1rkbA 173 20.83 c.37.1.1 111854 1bifA 469 20.87 c.37.1.7,c.60.1.4 31961,34003 1e6cA 173 21.05 c.37.1.2 59296 1x6vA 630 21.21 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qhfA 240 22.11 c.60.1.1 33960 2grjA 192 22.56 2q1zA 184 23.02 1ceo 343 23.73 1knqA 175 24.16 c.37.1.17 72786 1htwA 158 26.52 c.37.1.18 71083 1lv7A 257 26.95 c.37.1.20 78232 2ax4A 198 27.96 1xvlA 321 28.08 c.92.2.2 122380 2gxaA 274 28.50 2zgyA 320 28.61 1zunB 434 30.05 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1ak2A 233 30.12 c.37.1.1,g.41.2.1 31894,45195 2ixeA 271 30.37 1g6oA 330 30.98 c.37.1.11 32430 1khtA 192 31.03 c.37.1.1 84401 1tq4A 413 31.39 c.37.1.8 107201 3c8uA 208 31.56 1mwmA 320 32.62 c.55.1.1,c.55.1.1 79580,79581 1e4yA 214 33.63 c.37.1.1,g.41.2.1 31901,45181 2pt5A 168 34.02 3be4A 217 35.59 2bbsA 290 35.67 2jbwA 386 35.91 1d4aA 273 36.56 c.23.5.3 31219 2ak3A 226 37.19 c.37.1.1,g.41.2.1 31892,45193 2j41A 207 38.09 1gvnB 287 38.15 c.37.1.21 76354 1rz3A 201 38.68 c.37.1.6 98132 1akyA 220 39.68 c.37.1.1,g.41.2.1 31896,45197 1yqtA 538 39.91 1h4pA 408 39.92 c.1.8.3 90617 1bupA 386 39.96 c.55.1.1,c.55.1.1 33377,33378 1b0uA 262 41.69 c.37.1.12 32370 1pvdA 537 44.17 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2pmkA 243 47.61 1kjwA 295 50.39 b.34.2.1,c.37.1.1 68643,68644 1m1zA 513 51.88 c.26.2.1,d.153.1.1 78457,78458 1riiA 265 52.67 c.60.1.1 111807 2nq5A 755 54.80 3bgaA 1010 55.06 1kngA 156 55.08 c.47.1.10 72777 2ikqA 270 56.29 1njgA 250 57.21 c.37.1.20 85785 2citA 282 57.43 c.1.8.3 130499 1imjA 210 58.72 c.69.1.23 71246 2f6rA 281 58.97 1fj2A 232 60.09 c.69.1.14 34720 2bdqA 224 60.21 2hhjA 267 61.56 c.60.1.1 136497 1z47A 355 63.32 2g1iA 563 63.74 2pt7A 330 63.98 1o7dA 298 64.02 c.6.2.1 86641 2e9xC 219 64.06 1xxlA 239 64.46 c.66.1.41 116203 1ukz 203 64.91 2og2A 359 65.45 1vmaA 306 66.86 a.24.13.1,c.37.1.10 108887,108888 1jjvA 206 67.34 c.37.1.1 71698 1v7zA 260 67.39 c.125.1.1 100488 1gtvA 214 67.79 c.37.1.1 70537 1t9hA 307 69.50 b.40.4.5,c.37.1.8 112358,112359 2bjvA 265 70.73 1toaA 313 71.74 c.92.2.2 35598 4tmkA 213 73.30 c.37.1.1 31930 1fsgA 233 73.90 c.61.1.1 34029 1svjA 156 74.70 d.220.1.1 106049 1g55A 343 76.52 c.66.1.26 34247 1gz0A 253 76.56 c.116.1.1,d.79.3.3 76391,76392 2g1kA 176 76.70 c.37.1.2 134519 2d5lA 706 76.83 1d2nA 272 76.97 c.37.1.20 32428 1nar 290 77.06 2bdtA 189 78.26 c.37.1.25 128344 2higA 487 82.10 1qf5A 431 82.30 c.37.1.10 32212 1h2eA 207 82.50 c.60.1.1 70857 1oxxK 353 82.74 b.40.6.3,c.37.1.12 93715,93716 2f48A 555 83.78 c.89.1.1 132915 2pzeA 229 84.67 2c95A 196 85.47 1bu8A 452 87.08 b.12.1.2,c.69.1.19 23647,34795 1zuhA 168 87.65 1k0fA 277 89.15 c.92.2.2 71974 1ufoA 238 89.27 c.69.1.27 99344