# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.3439 2p5tB 253 2.281 1in6A 334 2.600 a.4.5.11,c.37.1.20 62601,62602 2qjwA 176 3.081 2o2gA 223 4.172 1lv7A 257 4.634 c.37.1.20 78232 1in4A 334 5.306 a.4.5.11,c.37.1.20 62597,62598 3be4A 217 7.995 2gzaA 361 8.671 1akyA 220 9.152 c.37.1.1,g.41.2.1 31896,45197 1rj9A 304 9.638 a.24.13.1,c.37.1.10 97553,97554 1p5zB 263 10.51 c.37.1.1 87815 2z0hA 197 12.17 2rhmA 193 12.64 1bif 469 13.28 1e6cA 173 13.92 c.37.1.2 59296 1bifA 469 14.11 c.37.1.7,c.60.1.4 31961,34003 3b9qA 302 16.81 2p35A 259 17.35 1d2nA 272 18.50 c.37.1.20 32428 2eyuA 261 19.43 1of1A 376 21.92 c.37.1.1 103924 2bklA 695 23.24 1e4yA 214 23.66 c.37.1.1,g.41.2.1 31901,45181 1p6xA 334 23.85 c.37.1.1 94195 2pt7A 330 24.17 2jbwA 386 24.67 1pv1A 299 24.74 c.69.1.34 111639 2f6rA 281 25.25 1gvnB 287 25.50 c.37.1.21 76354 2v40A 459 25.73 2vbfA 570 25.81 1viaA 175 26.63 c.37.1.2 100754 1jfrA 262 27.51 c.69.1.16 34724 1xvlA 321 27.81 c.92.2.2 122380 2grjA 192 31.11 3bs4A 260 31.12 1neyA 247 31.44 c.1.1.1 80449 1x6vA 630 33.75 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1m1zA 513 34.39 c.26.2.1,d.153.1.1 78457,78458 1g6oA 330 35.04 c.37.1.11 32430 2nxwA 565 36.11 2ak3A 226 36.23 c.37.1.1,g.41.2.1 31892,45193 2g1iA 563 36.26 2ihtA 573 36.43 1kdoA 227 36.97 c.37.1.1 68478 1zu4A 320 37.73 1np6A 174 37.81 c.37.1.10 85954 2d5lA 706 38.13 1ji0A 240 38.76 c.37.1.12 71665 1tq4A 413 39.62 c.37.1.8 107201 2hu5A 582 39.69 b.69.7.2,c.69.1.33 136763,136764 2iyvA 184 40.13 c.37.1.2 137812 1qh8A 478 41.59 c.92.2.3 35633 2ax3A 502 42.23 c.72.1.4,c.104.1.1 127477,127478 1yr2A 741 42.42 1ki9A 192 43.20 c.37.1.1 84404 2nygA 273 44.25 2bdqA 224 44.71 3bxpA 277 45.26 1m1nA 491 47.51 c.92.2.3 78417 2c31A 568 48.13 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1a7j 290 48.52 1fsgA 233 49.45 c.61.1.1 34029 2qruA 274 49.53 2vp4A 230 49.76 2pt5A 168 50.03 1ak2A 233 50.20 c.37.1.1,g.41.2.1 31894,45195 1imjA 210 50.28 c.69.1.23 71246 2olrA 540 50.40 c.91.1.1,c.109.1.1 139140,139141 2yvuA 186 50.66 2citA 282 51.20 c.1.8.3 130499 1bu8A 452 52.67 b.12.1.2,c.69.1.19 23647,34795 2dp3A 257 53.49 1fj2A 232 53.57 c.69.1.14 34720 1rkbA 173 55.26 c.37.1.1 111854 1ukzA 203 55.58 c.37.1.1 31840 3c8uA 208 56.97 1pjr 724 57.83 1xjcA 169 58.42 c.37.1.10 115387 2ccjA 205 58.53 3cmgA 667 60.54 1rz3A 201 60.87 c.37.1.6 98132 2q8pA 260 62.37 2v3gA 283 62.70 1toaA 313 63.06 c.92.2.2 35598 1hplA 449 63.28 b.12.1.2,c.69.1.19 23639,34787 1jndA 420 63.95 c.1.8.5,d.26.3.1 71757,71758 2a5yB 549 63.99 2hfkA 319 64.13 2uz1A 563 65.02 1ituA 369 65.66 c.1.9.7 71423 1gz0A 253 66.11 c.116.1.1,d.79.3.3 76391,76392 1qf9A 194 66.97 c.37.1.1 31848 2cb9A 244 68.13 2fx5A 258 69.24 16pkA 415 70.68 c.86.1.1 35454 1gtvA 214 73.35 c.37.1.1 70537 2etvA 346 74.15 c.92.2.4 132372 1y63A 184 74.44 c.37.1.1 116494 1gl6A 436 75.23 c.37.1.11 70259 1n55A 251 75.52 c.1.1.1 80007 1mwmA 320 77.33 c.55.1.1,c.55.1.1 79580,79581 2dt8A 280 78.19 1fh9A 312 79.14 c.1.8.3 28913 1kjwA 295 80.16 b.34.2.1,c.37.1.1 68643,68644 2dy1A 665 80.76 2pvpA 367 80.92 1a7jA 290 81.34 c.37.1.6 31952 2j0eA 266 81.89 2gebA 185 82.30 1jkmA 358 82.73 c.69.1.2 34633 1f0nA 285 83.50 c.69.1.3 34636 2uz0A 263 83.75 3bgaA 1010 85.03 2pezA 179 87.13 1kv5A 250 87.36 c.1.1.1 73052 2ax4A 198 87.56 1w78A 422 88.24 2j27A 250 89.17