# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1dv1A 449 2.698 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1tuoA 464 3.417 2zgyA 320 5.091 2ip2A 334 6.677 1j5sA 463 8.132 c.1.9.8 71580 2o1eA 312 8.380 1gsoA 431 9.886 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1e58A 249 10.70 c.60.1.1 59262 2exrA 524 11.48 1dv2A 452 11.75 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2p8uA 478 11.85 2dbqA 334 12.12 1r2rA 248 12.16 c.1.1.1 96875 2ccjA 205 13.76 1oltA 457 14.14 c.1.28.2 93334 1p5dX 463 14.39 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1gvnB 287 14.81 c.37.1.21 76354 1gdhA 320 15.23 c.2.1.4,c.23.12.1 30095,31355 2ragA 417 15.38 2iv2X 715 16.16 b.52.2.2,c.81.1.1 137714,137715 1yzyA 413 16.54 c.146.1.1 124292 1z7aA 308 16.71 c.6.2.6 124591 1hv9A 456 17.75 b.81.1.4,c.68.1.5 28060,34518 2dp3A 257 17.75 1yyaA 250 19.29 2yrxA 451 19.67 2i5gA 325 19.80 2g76A 335 20.75 1m32A 366 20.85 c.67.1.3 78508 2gcgA 330 21.60 1qhfA 240 21.92 c.60.1.1 33960 2bbsA 290 23.15 3bjdA 332 25.44 1iugA 352 25.68 c.67.1.3 90699 2epgA 487 25.87 1f0kA 364 26.05 c.87.1.2 35465 2a6pA 208 26.08 2hhjA 267 26.41 c.60.1.1 136497 1neyA 247 27.05 c.1.1.1 80449 3bh1A 507 27.19 1q7zA 566 27.53 c.1.21.2,c.1.26.1 96090,96091 1xkyA 301 28.01 c.1.10.1 122094 1mo0A 275 28.48 c.1.1.1 79329 1zjaA 557 28.65 1w5qA 337 28.84 2gzmA 267 29.26 1ako 268 29.76 1m6jA 261 29.80 c.1.1.1 78693 2dy1A 665 30.47 2aq4A 434 30.55 1gnxA 479 30.77 c.1.8.4 76241 1yx1A 264 30.92 c.1.15.7 124169 2a5yB 549 31.04 1t7lA 766 31.52 1qwgA 251 32.26 c.1.27.1 96473 2douA 376 32.87 1y8cA 246 33.35 c.66.1.43 116563 2ddmA 283 33.66 2o9pA 454 33.68 1toaA 313 33.79 c.92.2.2 35598 1ceo 343 34.69 1o0sA 605 34.95 c.2.1.7,c.58.1.3 86540,86541 2ej5A 257 35.24 2qpqA 301 35.35 1ymqA 261 35.50 c.108.1.10 123707 1cl1A 395 36.65 c.67.1.3 34395 2infA 359 36.94 1ixhA 321 37.79 c.94.1.1 35761 2ay1A 394 39.11 c.67.1.1 34357 2qe6A 274 39.63 2z1aA 552 39.90 2j0wA 449 40.43 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1b9bA 255 40.83 c.1.1.1 28531 1mj3A 260 41.04 c.14.1.3 79183 1x19A 359 41.56 1hnjA 317 42.42 c.95.1.2,c.95.1.2 35969,35970 1t6cA 315 42.58 c.55.1.8,c.55.1.8 106558,106559 1yaaA 412 43.25 c.67.1.1 34280 2nutA 769 43.64 1hl2A 297 43.85 c.1.10.1 83581 1l5oA 356 44.44 c.39.1.1 77711 2q4wA 524 44.78 1kv5A 250 45.03 c.1.1.1 73052 1zowA 313 45.33 1pyfA 312 46.42 c.1.7.1 95334 2bm0A 691 46.58 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1riiA 265 47.30 c.60.1.1 111807 2i62A 265 47.79 2vc7A 314 47.96 2apoA 357 48.31 b.122.1.1,d.265.1.2 127133,127134 1b3bA 415 48.78 c.2.1.7,c.58.1.1 30244,33892 1gtmA 419 49.82 c.2.1.7,c.58.1.1 30223,33871 2hmcA 344 49.84 2f7lA 455 50.11 1ydnA 295 51.37 1n55A 251 51.39 c.1.1.1 80007 1vcoA 550 51.93 c.23.16.1,c.37.1.10 108508,108509 1akoA 268 52.34 d.151.1.1 41779 1b6rA 355 52.86 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1ceoA 343 52.95 c.1.8.3 28808 1hz4A 373 54.87 a.118.8.2 65960 1u6eA 335 56.45 c.95.1.2,c.95.1.2 119568,119569 1ybeA 449 56.87 c.1.17.2,d.41.2.2 116605,116606 3bk2A 562 57.29 3cerA 343 57.88 2j13A 247 57.99 c.6.2.3 137934 2f2eA 146 58.73 a.4.5.69 132808 1y8aA 332 58.98 2fncA 381 61.15 1mla 309 61.18 3cyjA 372 61.37 1nnhA 294 62.27 d.104.1.1 92005 1vpvA 300 62.48 c.119.1.1 113975 1wqaA 455 62.75 1mzjA 339 63.63 c.95.1.2,c.95.1.2 79700,79701 2ebdA 309 64.48 1v73A 342 65.15 1k0fA 277 66.47 c.92.2.2 71974 2pceA 386 66.67 2fq6A 415 66.88 c.67.1.3 133939 1mv8A 436 67.04 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1tq4A 413 67.71 c.37.1.8 107201 1mlaA 309 67.76 c.19.1.1,d.58.23.1 31031,39383 2d0oA 610 67.82 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1rhs 296 68.10 1a9xA 1058 69.48 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1o5xA 248 69.67 c.1.1.1 92528 1kjqA 391 69.96 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2qpxA 376 70.71 1r8eA 278 71.30 a.6.1.3,d.60.1.1 104843,104844 1vpqA 273 71.87 c.1.32.1 113974 1m3uA 264 73.07 c.1.12.8 84784 1vfvA 366 73.09 c.37.1.9 108592 1svsA 353 73.71 c.37.1.8 106051 1ixh 321 74.20 1wwkA 307 74.50 2atsA 292 76.13 c.1.10.1 127306 1zuwA 272 76.67 2hgsA 474 77.55 c.30.1.4,d.142.1.6 31722,75997 1w96A 554 77.58 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 2btoA 473 78.63 1y7tA 327 78.64 c.2.1.5,d.162.1.1 122718,122719 1cipA 353 78.75 a.66.1.1,c.37.1.8 18210,32093 1b26A 416 79.66 c.2.1.7,c.58.1.1 30232,33880 1fp1D 372 79.93 a.4.5.29,c.66.1.12 59939,59940 1ug6A 431 80.50 c.1.8.4 88490 1wm1A 317 81.73 c.69.1.7 109405 1bn7A 294 83.61 c.69.1.8 34677 2p8bA 369 83.77 1xpkC 388 83.83 c.95.1.2,c.95.1.2 115747,115748 1rhsA 296 84.04 c.46.1.2,c.46.1.2 32703,32704 1x54A 434 84.40 3c4vA 426 84.48 1wx1A 335 84.77 2j27A 250 85.53 1ajsA 412 85.72 c.67.1.1 34276 3cggA 195 86.76 1ua4A 455 87.09 c.72.1.3 99128 1mx3A 347 87.27 c.2.1.4,c.23.12.1 79638,79639 1m15A 357 87.75 a.83.1.1,d.128.1.2 78368,78369 2bmaA 470 87.77 1fxjA 331 88.92 b.81.1.4,c.68.1.5 28062,34520 1yhtA 367 89.03 c.1.8.6 123213 2p5tB 253 89.42