# List of top-scoring protein chains for T0419.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yvuA	186	4.226		
2j289	430	4.339		
2pbrA	195	12.35		
2z0hA	197	13.13		
2plrA	213	14.22		
2qorA	204	15.43		
1ftsA	295	15.97	a.24.13.1,c.37.1.10	16968,32279
2iyoA	472	16.18		
2iypA	473	16.21		
2iz1A	474	16.24		
2qy9A	309	16.95		
1e9fA	217	19.35	c.37.1.1	64811
1qzxA	440	21.39	a.24.13.1,a.36.1.1,c.37.1.10	96711,96712,96713
3bioA	304	23.20		
1z6gA	218	23.38		
1uj2A	252	25.88	c.37.1.6	99452
1mtoA	319	26.89	c.89.1.1	79458
1xrjA	261	27.00	c.37.1.6	122256
3b9qA	302	27.72		
2og2A	359	30.20		
1fzqA	181	34.58	c.37.1.8	32060
1h65A	270	38.50	c.37.1.8	65640
3bb1A	274	38.56		
1vmaA	306	41.31	a.24.13.1,c.37.1.10	108887,108888
1ye8A	178	47.27	c.37.1.11	123010
2p90A	319	47.70		
1s9iA	354	48.27	d.144.1.7	112047
2f1rA	171	48.52		
2hnaA	147	55.11		
1z8fA	228	55.36		
4pfkA	319	56.22	c.89.1.1	35582
6pfkA	319	58.04	c.89.1.1	35583
1znwA	207	58.08	c.37.1.1	125412
1s4qA	228	61.27	c.37.1.1	98507
1mr3F	181	62.44	c.37.1.8	79422
1m1zA	513	65.06	c.26.2.1,d.153.1.1	78457,78458
1fduA	327	65.46	c.2.1.2	29848
1gvnB	287	65.85	c.37.1.21	76354
1gtvA	214	66.11	c.37.1.1	70537
2odpA	509	66.52		
2i6qA	517	67.82		
1nksA	194	69.05	c.37.1.1	31886
1e9eA	215	69.55	c.37.1.1	64810
2bifA	469	69.75	c.37.1.7,c.60.1.4	31963,34009
1bifA	469	70.16	c.37.1.7,c.60.1.4	31961,34003
3bifA	468	70.33	c.37.1.7,c.60.1.4	31962,34008
1nn5A	215	74.19	c.37.1.1	85892
1j8yF	297	77.69	a.24.13.1,c.37.1.10	62747,62748
2d4aA	308	78.43		
1e98A	215	78.72	c.37.1.1	64804
1a27A	289	78.91	c.2.1.2	29839
1j8mF	297	78.96	a.24.13.1,c.37.1.10	62742,62743
2j5bA	348	79.68		
1im5A	180	80.62	c.33.1.3	66211
1fdsA	327	81.20	c.2.1.2	29838
1kdoA	227	81.46	c.37.1.1	68478
2p55A	333	81.52		
2h57A	190	81.98		
1jtvA	327	82.32	c.2.1.2	84230
1s9jA	341	83.02	d.144.1.7	112049
1ukzA	203	83.72	c.37.1.1	31840
2pjzA	263	87.32		
2j41A	207	87.43		
1fdwA	327	89.29	c.2.1.2	29845