# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.006734 c.37.1.1 87815 2p67A 341 1.643 1z6gA 218 2.717 2hhjA 267 3.156 c.60.1.1 136497 2j41A 207 3.287 2qt1A 207 3.292 2z0hA 197 3.493 2ga8A 359 3.567 2yvuA 186 3.653 1ak2A 233 4.472 c.37.1.1,g.41.2.1 31894,45195 1n4aA 252 4.775 c.92.2.2 85317 2ccjA 205 5.024 1gtvA 214 5.534 c.37.1.1 70537 3c8uA 208 6.298 1nijA 318 6.689 c.37.1.10,d.237.1.1 85741,85742 1n2zA 245 6.926 c.92.2.2 79865 1in4A 334 6.947 a.4.5.11,c.37.1.20 62597,62598 1np6A 174 7.252 c.37.1.10 85954 1x6vA 630 8.184 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1ki9A 192 8.833 c.37.1.1 84404 1xjcA 169 10.00 c.37.1.10 115387 3be4A 217 10.44 2pbrA 195 10.68 2gzaA 361 10.68 1xel 338 10.95 1qqqA 264 11.30 d.117.1.1 40931 2cdnA 201 11.62 c.37.1.1 130289 2f1rA 171 13.59 1in6A 334 13.96 a.4.5.11,c.37.1.20 62601,62602 4tmkA 213 14.58 c.37.1.1 31930 1qf9A 194 14.92 c.37.1.1 31848 2orwA 184 14.98 1akyA 220 15.18 c.37.1.1,g.41.2.1 31896,45197 2qorA 204 17.08 3b9qA 302 17.98 1zi8A 236 19.12 2phzA 311 21.75 1kagA 173 21.80 c.37.1.2 72249 1efdN 266 22.56 c.92.2.1 35597 1yr2A 741 22.59 1ylhA 560 22.83 2oqyA 391 24.69 2bklA 695 25.23 1ltqA 301 25.65 c.108.1.9,c.37.1.1 78208,78209 1w44A 331 25.98 c.37.1.11 114147 1vplA 256 26.24 c.37.1.12 113966 2qy9A 309 26.73 2eyuA 261 26.92 1htwA 158 27.02 c.37.1.18 71083 2axpA 173 27.12 c.37.1.1 127497 1z8fA 228 27.51 2o2gA 223 28.58 1ev5A 264 28.75 d.117.1.1 40935 2pt7A 330 29.50 1evfA 264 29.62 d.117.1.1 40932 2r7aA 256 29.94 2grjA 192 30.63 1hvyA 288 30.94 d.117.1.1 41049 2vp4A 230 31.51 2q8uA 336 31.64 2oap1 511 33.33 1njgA 250 33.53 c.37.1.20 85785 1tib 269 33.79 2ax4A 198 33.80 2g8oA 264 33.83 d.117.1.1 134779 2g8mA 264 34.70 1qhfA 240 35.03 c.60.1.1 33960 1udcA 338 35.05 c.2.1.2 29785 1zuhA 168 35.14 2qw5A 335 35.65 1bkpA 278 36.28 d.117.1.1 41029 2osxA 481 36.89 1znwA 207 38.61 c.37.1.1 125412 1ukzA 203 39.54 c.37.1.1 31840 1fj2A 232 40.13 c.69.1.14 34720 1jjvA 206 40.15 c.37.1.1 71698 2qm8A 337 40.20 2ze7A 253 42.02 2higA 487 42.75 2pzeA 229 42.94 1e6cA 173 43.21 c.37.1.2 59296 1knqA 175 43.81 c.37.1.17 72786 1tq6A 413 44.18 c.37.1.8 107202 1f0nA 285 44.40 c.69.1.3 34636 1bf6A 291 44.62 c.1.9.3 29065 1viaA 175 45.29 c.37.1.2 100754 2og2A 359 45.68 1a7j 290 45.82 1ukz 203 46.33 2glfA 450 48.71 2k3aA 155 49.22 3b9pA 297 49.47 2pcjA 224 53.39 1of1A 376 54.21 c.37.1.1 103924 2yvtA 260 55.46 1bu8A 452 55.90 b.12.1.2,c.69.1.19 23647,34795 1e2kA 331 57.17 c.37.1.1 31854 1qhxA 178 57.24 c.37.1.3 31936 1bifA 469 58.83 c.37.1.7,c.60.1.4 31961,34003 1n3bA 216 58.96 c.37.1.1 79959 4xis 387 59.35 1v7zA 260 60.07 c.125.1.1 100488 2bdqA 224 60.60 1gg1A 350 61.20 c.1.10.4 29187 1gz0A 253 61.64 c.116.1.1,d.79.3.3 76391,76392 1cp2A 269 62.97 c.37.1.10 32269 1qfeA 252 66.06 c.1.10.1 29167 1tca 317 66.65 1ly1A 181 67.79 c.37.1.1 74334 2q8pA 260 67.93 1zin 217 67.93 1ayl 541 68.07 1xx6A 191 68.32 c.37.1.24,g.39.1.14 116139,116140 1gky 187 68.75 1st9A 143 68.92 c.47.1.10 98987 1of8A 370 69.84 c.1.10.4 92819 1uj2A 252 70.71 c.37.1.6 99452 1bif 469 70.74 1e4yA 214 71.04 c.37.1.1,g.41.2.1 31901,45181 1a5t 334 71.09 2ak3A 226 72.67 c.37.1.1,g.41.2.1 31892,45193 1e58A 249 73.33 c.60.1.1 59262 1j8yF 297 73.39 a.24.13.1,c.37.1.10 62747,62748 2r79A 283 73.96 2hsbA 126 74.79 1wz8A 264 74.98 c.14.1.3 121483 2fnaA 357 76.00 a.4.5.11,c.37.1.20 133809,133810 1yzyA 413 76.06 c.146.1.1 124292 1hdiA 413 77.02 c.86.1.1 60964 1a5tA 334 79.82 a.80.1.1,c.37.1.20 18450,32423 1f6bA 198 79.87 c.37.1.8 64986 2bwjA 199 82.04 1gqnA 252 82.25 c.1.10.1 90514 1zpdA 568 83.01 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1zxxA 319 83.05 2g3mA 693 83.54 1qhiA 366 83.60 c.37.1.1 31860 1din 236 83.73 1tcaA 317 84.67 c.69.1.17 34726 2j5vA 367 85.50 1yeyA 444 85.71 c.1.11.2,d.54.1.1 116664,116665 2pmkA 243 86.07 1p9bA 442 86.39 c.37.1.10 94385 1qh8A 478 87.00 c.92.2.3 35633 1p6xA 334 87.03 c.37.1.1 94195 2vhjA 331 87.13 3c8dA 403 87.60 2rebA 352 88.74 c.37.1.11,d.48.1.1 32282,38767 2bdtA 189 89.16 c.37.1.25 128344 1pujA 282 89.91 c.37.1.8 88294