# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.004920 c.37.1.1 87815 2hhjA 267 1.704 c.60.1.1 136497 2p67A 341 1.790 1n4aA 252 3.396 c.92.2.2 85317 1z6gA 218 3.608 3c8uA 208 3.987 2qt1A 207 4.046 3be4A 217 4.291 1ak2A 233 4.367 c.37.1.1,g.41.2.1 31894,45195 2z0hA 197 4.874 1n2zA 245 5.286 c.92.2.2 79865 4tmkA 213 5.337 c.37.1.1 31930 1ki9A 192 5.714 c.37.1.1 84404 2ga8A 359 6.778 2j41A 207 7.126 2yvuA 186 7.129 1akyA 220 8.172 c.37.1.1,g.41.2.1 31896,45197 1np6A 174 8.301 c.37.1.10 85954 2ccjA 205 8.601 2pbrA 195 9.094 2qorA 204 10.63 1gtvA 214 11.46 c.37.1.1 70537 1qf9A 194 11.56 c.37.1.1 31848 2f1rA 171 11.81 1x6vA 630 11.91 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1in4A 334 12.45 a.4.5.11,c.37.1.20 62597,62598 1xjcA 169 13.06 c.37.1.10 115387 2cdnA 201 13.47 c.37.1.1 130289 2gzaA 361 13.53 1nijA 318 14.03 c.37.1.10,d.237.1.1 85741,85742 1p6xA 334 14.15 c.37.1.1 94195 2orwA 184 14.54 1qhfA 240 16.31 c.60.1.1 33960 3b9qA 302 19.17 2phzA 311 19.74 1yr2A 741 20.18 1n8fA 350 20.50 c.1.10.4 85397 1d2rA 326 20.98 c.26.1.1 31572 1of8A 370 21.82 c.1.10.4 92819 1e2kA 331 22.06 c.37.1.1 31854 2eyuA 261 22.84 1in6A 334 24.58 a.4.5.11,c.37.1.20 62601,62602 1zi8A 236 25.45 2osxA 481 25.62 1ylhA 560 26.08 1xel 338 26.28 1gg1A 350 27.01 c.1.10.4 29187 1qqqA 264 27.43 d.117.1.1 40931 2qy9A 309 27.49 2o2gA 223 28.24 2bklA 695 28.41 1ukzA 203 28.84 c.37.1.1 31840 1kagA 173 29.50 c.37.1.2 72249 1htwA 158 29.52 c.37.1.18 71083 2k3aA 155 30.00 1zinA 217 31.57 c.37.1.1,g.41.2.1 31915,45178 1ltqA 301 32.03 c.108.1.9,c.37.1.1 78208,78209 2oqyA 391 32.34 1hvyA 288 33.01 d.117.1.1 41049 2plrA 213 33.06 1bu8A 452 33.38 b.12.1.2,c.69.1.19 23647,34795 1e4yA 214 34.17 c.37.1.1,g.41.2.1 31901,45181 1ukz 203 34.78 1tib 269 34.96 1w44A 331 35.08 c.37.1.11 114147 1z8fA 228 35.15 2pzeA 229 35.40 2qm8A 337 36.77 2vp4A 230 37.16 2grjA 192 38.44 2r79A 283 39.14 1pujA 282 39.19 c.37.1.8 88294 1bf2 750 39.56 2ax4A 198 42.04 2oap1 511 43.32 1vplA 256 46.11 c.37.1.12 113966 1bifA 469 46.32 c.37.1.7,c.60.1.4 31961,34003 1f0nA 285 48.12 c.69.1.3 34636 1riiA 265 48.32 c.60.1.1 111807 1zuhA 168 48.37 2glfA 450 49.60 1fj2A 232 50.99 c.69.1.14 34720 1znwA 207 52.62 c.37.1.1 125412 1zin 217 53.83 1qh8A 478 53.99 c.92.2.3 35633 1p3jA 217 54.22 c.37.1.1,g.41.2.1 94022,94023 1udcA 338 54.78 c.2.1.2 29785 1bif 469 54.80 2o1sA 621 57.14 1m1nA 491 57.74 c.92.2.3 78417 1uj2A 252 58.58 c.37.1.6 99452 2axpA 173 59.10 c.37.1.1 127497 1hdiA 413 59.29 c.86.1.1 60964 1v7zA 260 59.52 c.125.1.1 100488 1of1A 376 59.60 c.37.1.1 103924 2g8oA 264 61.29 d.117.1.1 134779 2q8pA 260 61.45 1j8yF 297 61.63 a.24.13.1,c.37.1.10 62747,62748 1wz8A 264 61.67 c.14.1.3 121483 2bwjA 199 62.39 1efdN 266 62.53 c.92.2.1 35597 1din 236 65.79 2og2A 359 65.83 1qhiA 366 65.96 c.37.1.1 31860 2qw5A 335 67.31 2npnA 251 67.89 1xx6A 191 68.58 c.37.1.24,g.39.1.14 116139,116140 1ag9A 175 69.08 c.23.5.1 31178 2vhjA 331 69.35 2r7aA 256 69.47 1e58A 249 70.41 c.60.1.1 59262 2g3mA 693 70.56 2g8mA 264 71.21 2qptA 550 73.27 1i6iA 366 73.34 c.37.1.9 61844 2bdqA 224 73.35 1ayl 541 73.51 1njgA 250 74.58 c.37.1.20 85785 2j5vA 367 75.93 1zd8A 227 76.18 2ak3A 226 76.22 c.37.1.1,g.41.2.1 31892,45193 1bf6A 291 76.89 c.1.9.3 29065 2pmkA 243 77.40 1ev5A 264 77.51 d.117.1.1 40935 16pkA 415 78.03 c.86.1.1 35454 1gt6A 269 81.16 c.69.1.17 76342 2q8uA 336 81.20 3b6uA 372 82.12 2pt7A 330 82.69 1evfA 264 82.92 d.117.1.1 40932 2cbzA 237 83.25 2ze7A 253 84.17 1bkpA 278 84.88 d.117.1.1 41029 1cp2A 269 85.59 c.37.1.10 32269 2eu8A 216 85.79 2yvtA 260 86.39 2vc7A 314 87.55 1gz0A 253 88.17 c.116.1.1,d.79.3.3 76391,76392 3b8dA 363 88.86 1ry6A 360 89.42 c.37.1.9 98090 1e6cA 173 89.60 c.37.1.2 59296 1a7j 290 89.61