# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.000661 c.37.1.1 87815 2p67A 341 0.7047 1x6vA 630 1.073 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1z6gA 218 1.164 2yvuA 186 1.190 4tmkA 213 1.576 c.37.1.1 31930 2ax4A 198 2.560 1n4aA 252 2.639 c.92.2.2 85317 2pbrA 195 2.799 1qf9A 194 2.880 c.37.1.1 31848 1gtvA 214 3.148 c.37.1.1 70537 3be4A 217 3.190 2hhjA 267 3.374 c.60.1.1 136497 2ccjA 205 3.507 1n2zA 245 4.029 c.92.2.2 79865 1ukzA 203 4.457 c.37.1.1 31840 2f1rA 171 4.725 2orwA 184 5.728 1in4A 334 6.149 a.4.5.11,c.37.1.20 62597,62598 1xjcA 169 6.491 c.37.1.10 115387 1np6A 174 6.517 c.37.1.10 85954 2z0hA 197 7.803 1ak2A 233 8.768 c.37.1.1,g.41.2.1 31894,45195 2r7aA 256 9.090 3c8uA 208 9.527 1efdN 266 9.626 c.92.2.1 35597 2qt1A 207 9.653 1nijA 318 9.708 c.37.1.10,d.237.1.1 85741,85742 1in6A 334 9.771 a.4.5.11,c.37.1.20 62601,62602 1ki9A 192 10.67 c.37.1.1 84404 1xel 338 11.10 2vp4A 230 11.76 1ltqA 301 12.07 c.108.1.9,c.37.1.1 78208,78209 2j41A 207 13.99 1e4yA 214 14.79 c.37.1.1,g.41.2.1 31901,45181 2gzaA 361 15.71 1ag9A 175 15.81 c.23.5.1 31178 1z8fA 228 16.01 2qorA 204 16.31 2nwhA 317 17.47 1e2kA 331 18.19 c.37.1.1 31854 2phzA 311 19.20 1akyA 220 19.76 c.37.1.1,g.41.2.1 31896,45197 2ga8A 359 21.03 1p3jA 217 21.22 c.37.1.1,g.41.2.1 94022,94023 2eyuA 261 21.36 2qm8A 337 21.57 1knqA 175 21.61 c.37.1.17 72786 1zpdA 568 22.08 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1xx6A 191 22.52 c.37.1.24,g.39.1.14 116139,116140 2bwjA 199 23.45 3b9qA 302 23.95 2p5tB 253 24.52 1gz0A 253 25.02 c.116.1.1,d.79.3.3 76391,76392 1zin 217 26.54 1kagA 173 27.02 c.37.1.2 72249 2qy9A 309 27.45 1n8fA 350 27.64 c.1.10.4 85397 2r79A 283 27.78 2glfA 450 28.05 2bdtA 189 28.42 c.37.1.25 128344 2oqyA 391 29.28 2q8pA 260 30.45 1bifA 469 30.95 c.37.1.7,c.60.1.4 31961,34003 1a7j 290 31.88 1qhiA 366 32.09 c.37.1.1 31860 1bif 469 32.21 2pfkA 320 32.47 c.89.1.1 35577 1of1A 376 32.81 c.37.1.1 103924 1tq6A 413 33.28 c.37.1.8 107202 1qhfA 240 33.37 c.60.1.1 33960 1qqqA 264 33.54 d.117.1.1 40931 1bf6A 291 33.88 c.1.9.3 29065 1u6zA 513 33.93 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2vbfA 570 33.99 1ylhA 560 34.13 2axpA 173 34.35 c.37.1.1 127497 1v7zA 260 37.39 c.125.1.1 100488 2higA 487 38.60 2grjA 192 38.85 1bkpA 278 39.08 d.117.1.1 41029 2rhmA 193 39.26 1of8A 370 39.43 c.1.10.4 92819 1zi8A 236 39.83 1hvyA 288 40.06 d.117.1.1 41049 1q6zA 528 40.26 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1ukz 203 41.11 1j8yF 297 41.69 a.24.13.1,c.37.1.10 62747,62748 1znwA 207 41.74 c.37.1.1 125412 1st9A 143 42.60 c.47.1.10 98987 1yzyA 413 45.71 c.146.1.1 124292 2vc7A 314 47.04 1udcA 338 47.05 c.2.1.2 29785 2plrA 213 47.08 1ly1A 181 47.27 c.37.1.1 74334 2vg3A 284 47.43 1w44A 331 47.50 c.37.1.11 114147 1gg1A 350 48.11 c.1.10.4 29187 2k3aA 155 50.00 1p6xA 334 50.21 c.37.1.1 94195 1bu8A 452 50.38 b.12.1.2,c.69.1.19 23647,34795 2yv5A 302 50.44 1n3bA 216 50.71 c.37.1.1 79959 1f6bA 198 50.93 c.37.1.8 64986 1yeyA 444 51.04 c.1.11.2,d.54.1.1 116664,116665 1bupA 386 51.26 c.55.1.1,c.55.1.1 33377,33378 1htwA 158 51.58 c.37.1.18 71083 1assA 159 51.88 c.8.5.2 30818 4xis 387 52.42 3b9pA 297 52.78 1viaA 175 52.84 c.37.1.2 100754 1f0nA 285 53.61 c.69.1.3 34636 1g6oA 330 54.54 c.37.1.11 32430 2j00I 128 54.60 d.14.1.1 137847 1ozhA 566 55.12 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2vqeI 128 55.32 2q8uA 336 57.74 1riiA 265 59.02 c.60.1.1 111807 1ji0A 240 59.11 c.37.1.12 71665 2j5vA 367 60.00 3bh0A 315 60.23 1oe0A 230 60.97 c.37.1.1 92788 1e6cA 173 61.21 c.37.1.2 59296 1bfd 528 61.31 1ayl 541 63.11 2f7tA 227 64.68 2yvtA 260 64.77 2o2gA 223 65.04 2ze7A 253 65.45 2hsbA 126 66.60 2a9kB 223 66.92 d.166.1.1 126443 2vg2A 284 67.04 1ypvA 313 67.21 1pvdA 537 67.88 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1zinA 217 69.90 c.37.1.1,g.41.2.1 31915,45178 1qfeA 252 70.41 c.1.10.1 29167 1yrbA 262 72.53 c.37.1.10 123915 1zd8A 227 72.65 1m5wA 243 72.78 c.1.24.1 84836 1r0wA 286 74.70 c.37.1.12 96754 1gmlA 178 75.29 c.8.5.2 70273 1yr2A 741 75.33 1zm7A 230 78.32 1epxA 370 79.46 c.1.10.1 29150 1gky 187 79.99 2rebA 352 80.17 c.37.1.11,d.48.1.1 32282,38767 2g8mA 264 80.21 1ev5A 264 80.45 d.117.1.1 40935 1sviA 195 82.34 c.37.1.8 106048 2vhjA 331 82.64 1egaA 301 83.51 c.37.1.8,d.52.3.1 32150,38836 1nksA 194 83.75 c.37.1.1 31886 1ctqA 166 83.94 c.37.1.8 31965 2og2A 359 84.88 2ac7A 235 85.17 c.56.2.1 126543 2v5xA 388 85.35 2bdqA 224 85.39 2g8oA 264 85.41 d.117.1.1 134779 1e58A 249 87.21 c.60.1.1 59262 1gqnA 252 88.03 c.1.10.1 90514 2j27A 250 89.05 2c31A 568 89.53 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706