# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.000544 c.37.1.1 87815 2p67A 341 0.8751 1z6gA 218 1.248 2j41A 207 1.424 1ak2A 233 1.483 c.37.1.1,g.41.2.1 31894,45195 3be4A 217 2.203 1x6vA 630 2.839 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ccjA 205 2.897 2z0hA 197 3.248 1n4aA 252 3.334 c.92.2.2 85317 2ga8A 359 3.522 2qt1A 207 3.622 2ax4A 198 3.656 1in4A 334 3.697 a.4.5.11,c.37.1.20 62597,62598 1nijA 318 4.065 c.37.1.10,d.237.1.1 85741,85742 1gtvA 214 4.750 c.37.1.1 70537 2cdnA 201 4.933 c.37.1.1 130289 2hhjA 267 5.629 c.60.1.1 136497 1akyA 220 5.687 c.37.1.1,g.41.2.1 31896,45197 1in6A 334 5.973 a.4.5.11,c.37.1.20 62601,62602 1ki9A 192 6.079 c.37.1.1 84404 1n2zA 245 6.502 c.92.2.2 79865 2qorA 204 7.391 2gzaA 361 8.084 1ukzA 203 8.098 c.37.1.1 31840 3c8uA 208 8.265 1np6A 174 8.468 c.37.1.10 85954 2pbrA 195 8.945 1z8fA 228 9.171 1ukz 203 9.225 2yvuA 186 10.82 1qf9A 194 11.30 c.37.1.1 31848 2phzA 311 11.34 1knqA 175 12.27 c.37.1.17 72786 2oqyA 391 14.24 4tmkA 213 14.80 c.37.1.1 31930 2bwjA 199 15.48 1xjcA 169 15.51 c.37.1.10 115387 2f1rA 171 15.92 1qfeA 252 16.59 c.1.10.1 29167 1kagA 173 16.68 c.37.1.2 72249 1tq6A 413 17.10 c.37.1.8 107202 3b9qA 302 17.31 1zuhA 168 17.58 2vp4A 230 17.64 1vplA 256 17.71 c.37.1.12 113966 2q8pA 260 18.94 1efdN 266 19.87 c.92.2.1 35597 4xis 387 20.52 1gqnA 252 20.98 c.1.10.1 90514 2axpA 173 22.25 c.37.1.1 127497 1htwA 158 23.06 c.37.1.18 71083 2pcjA 224 23.40 1p0kA 349 24.80 c.1.4.1 87648 2grjA 192 25.18 1ylhA 560 25.71 2qy9A 309 26.58 2ze7A 253 27.08 2plrA 213 27.14 1ozhA 566 27.71 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1yr2A 741 28.09 2qw5A 335 28.73 2bdtA 189 28.92 c.37.1.25 128344 1qqqA 264 31.39 d.117.1.1 40931 2oap1 511 31.44 1uj2A 252 31.96 c.37.1.6 99452 2yvtA 260 34.77 2osxA 481 34.93 1e4yA 214 34.99 c.37.1.1,g.41.2.1 31901,45181 1ji0A 240 36.46 c.37.1.12 71665 1znwA 207 36.60 c.37.1.1 125412 1zin 217 36.77 2rhmA 193 37.15 1bf2 750 37.90 1zinA 217 38.03 c.37.1.1,g.41.2.1 31915,45178 2eyuA 261 38.15 1qhxA 178 38.33 c.37.1.3 31936 2pzeA 229 38.68 1n3bA 216 39.73 c.37.1.1 79959 1e2kA 331 40.45 c.37.1.1 31854 2q8uA 336 41.17 1yixA 265 41.68 c.1.9.12 123371 1a7j 290 41.73 1njgA 250 41.88 c.37.1.20 85785 2r79A 283 42.31 1zd8A 227 43.09 1p3jA 217 44.68 c.37.1.1,g.41.2.1 94022,94023 2p5tB 253 44.93 1f0nA 285 47.35 c.69.1.3 34636 1cp2A 269 47.45 c.37.1.10 32269 1xx6A 191 48.19 c.37.1.24,g.39.1.14 116139,116140 2vafA 378 50.09 1v7zA 260 50.46 c.125.1.1 100488 2rgxA 206 50.51 1viaA 175 51.19 c.37.1.2 100754 2k3aA 155 51.65 3b9pA 297 51.82 3tmkA 216 52.84 c.37.1.1 31920 2g8oA 264 52.87 d.117.1.1 134779 1p9bA 442 53.81 c.37.1.10 94385 1ly1A 181 54.10 c.37.1.1 74334 2o2gA 223 54.22 1jjvA 206 54.27 c.37.1.1 71698 1of8A 370 56.05 c.1.10.4 92819 2c31A 568 56.11 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2g1iA 563 56.25 1xel 338 56.44 1n8fA 350 57.24 c.1.10.4 85397 2hf9A 226 57.55 1f6bA 198 57.61 c.37.1.8 64986 2g8mA 264 57.77 1zpdA 568 60.28 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1j3bA 529 60.44 c.91.1.1,c.109.1.1 77071,77072 1qhfA 240 60.46 c.60.1.1 33960 1rkbA 173 60.89 c.37.1.1 111854 1gg1A 350 61.73 c.1.10.4 29187 1riiA 265 62.36 c.60.1.1 111807 1pvdA 537 62.84 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1s4qA 228 63.12 c.37.1.1 98507 1gmlA 178 63.26 c.8.5.2 70273 1st9A 143 64.19 c.47.1.10 98987 1t0hB 224 66.00 c.37.1.1 106208 1yeyA 444 66.08 c.1.11.2,d.54.1.1 116664,116665 1of1A 376 66.36 c.37.1.1 103924 2g1kA 176 67.43 c.37.1.2 134519 2hsbA 126 67.77 1fj2A 232 68.01 c.69.1.14 34720 1zi8A 236 69.70 1hvyA 288 70.08 d.117.1.1 41049 1vmaA 306 71.76 a.24.13.1,c.37.1.10 108887,108888 2q62A 247 73.82 1bkpA 278 74.09 d.117.1.1 41029 2pt7A 330 74.77 1ltqA 301 74.83 c.108.1.9,c.37.1.1 78208,78209 1esmA 316 75.85 c.37.1.6 31953 2c95A 196 75.98 1n25A 368 76.28 c.37.1.20 85264 1qh8A 478 76.69 c.92.2.3 35633 2qm8A 337 77.81 1q6zA 528 79.70 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1gvnB 287 80.02 c.37.1.21 76354 2pmkA 243 81.29 1wz8A 264 81.72 c.14.1.3 121483 2f6rA 281 83.12 1ayl 541 83.66 1bfd 528 84.45 1bf6A 291 84.74 c.1.9.3 29065 2cbzA 237 86.47 1gz0A 253 86.83 c.116.1.1,d.79.3.3 76391,76392 2ewsA 287 88.39 1ev5A 264 89.16 d.117.1.1 40935 2iyvA 184 89.73 c.37.1.2 137812 1k30A 368 89.79 c.112.1.1 68067 2glfA 450 89.95