# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.000992 c.37.1.1 87815 2p67A 341 0.5372 1z6gA 218 1.028 1ak2A 233 1.353 c.37.1.1,g.41.2.1 31894,45195 2z0hA 197 1.370 1n4aA 252 1.781 c.92.2.2 85317 2j41A 207 1.782 1x6vA 630 1.934 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ax4A 198 2.311 2ccjA 205 2.502 1n2zA 245 2.617 c.92.2.2 79865 1in4A 334 2.794 a.4.5.11,c.37.1.20 62597,62598 2ga8A 359 2.812 3be4A 217 2.984 1gtvA 214 3.285 c.37.1.1 70537 2qt1A 207 3.933 2hhjA 267 3.935 c.60.1.1 136497 2cdnA 201 4.271 c.37.1.1 130289 1nijA 318 4.495 c.37.1.10,d.237.1.1 85741,85742 1ki9A 192 5.240 c.37.1.1 84404 2qorA 204 5.322 1in6A 334 5.482 a.4.5.11,c.37.1.20 62601,62602 3c8uA 208 5.508 4tmkA 213 5.707 c.37.1.1 31930 1akyA 220 6.068 c.37.1.1,g.41.2.1 31896,45197 1vplA 256 6.122 c.37.1.12 113966 2pbrA 195 6.164 1ukzA 203 7.153 c.37.1.1 31840 2gzaA 361 7.577 1np6A 174 7.869 c.37.1.10 85954 1ukz 203 8.225 1xjcA 169 8.833 c.37.1.10 115387 1z8fA 228 8.874 2yvuA 186 9.003 2pcjA 224 9.198 1knqA 175 9.738 c.37.1.17 72786 2plrA 213 10.19 1tq6A 413 11.44 c.37.1.8 107202 1qf9A 194 12.03 c.37.1.1 31848 2vp4A 230 13.52 2oqyA 391 13.68 2f1rA 171 13.77 2q8pA 260 14.26 3b9qA 302 14.33 1htwA 158 14.36 c.37.1.18 71083 1efdN 266 16.46 c.92.2.1 35597 2phzA 311 16.57 2bdtA 189 16.72 c.37.1.25 128344 1qqqA 264 17.10 d.117.1.1 40931 2qy9A 309 17.62 1p0kA 349 17.90 c.1.4.1 87648 3tmkA 216 19.02 c.37.1.1 31920 1yr2A 741 19.39 2bwjA 199 19.48 1kagA 173 19.59 c.37.1.2 72249 1ozhA 566 19.77 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1zuhA 168 21.20 2axpA 173 21.67 c.37.1.1 127497 1xel 338 23.54 2oap1 511 23.58 4xis 387 24.28 1a7j 290 24.34 1qfeA 252 24.65 c.1.10.1 29167 2eyuA 261 26.84 1ylhA 560 26.88 2qw5A 335 27.28 2q8uA 336 27.61 1ji0A 240 28.16 c.37.1.12 71665 2ze7A 253 28.27 1znwA 207 28.93 c.37.1.1 125412 2grjA 192 29.17 1uj2A 252 29.63 c.37.1.6 99452 2g8oA 264 30.01 d.117.1.1 134779 1gqnA 252 30.28 c.1.10.1 90514 2osxA 481 31.03 2higA 487 31.45 1zinA 217 33.01 c.37.1.1,g.41.2.1 31915,45178 1bf2 750 33.12 2pzeA 229 33.29 2r79A 283 33.63 2hf9A 226 33.86 1bu8A 452 34.64 b.12.1.2,c.69.1.19 23647,34795 1xx6A 191 34.68 c.37.1.24,g.39.1.14 116139,116140 2p5tB 253 34.96 1njgA 250 35.26 c.37.1.20 85785 2o2gA 223 35.63 1qhxA 178 37.18 c.37.1.3 31936 2bklA 695 37.52 1cp2A 269 37.63 c.37.1.10 32269 1e2kA 331 37.90 c.37.1.1 31854 2rhmA 193 38.05 2g8mA 264 38.31 1zin 217 39.86 1n3bA 216 39.90 c.37.1.1 79959 1ev5A 264 40.10 d.117.1.1 40935 2k3aA 155 40.49 1s4qA 228 40.59 c.37.1.1 98507 1hvyA 288 40.75 d.117.1.1 41049 1qhfA 240 41.47 c.60.1.1 33960 3b9pA 297 41.47 2vafA 378 42.39 2yvtA 260 42.98 1n8fA 350 43.11 c.1.10.4 85397 1zd8A 227 43.39 1bif 469 45.16 1vmaA 306 46.18 a.24.13.1,c.37.1.10 108887,108888 1zi8A 236 46.33 2hsbA 126 47.97 1bkpA 278 48.29 d.117.1.1 41029 1f0nA 285 48.69 c.69.1.3 34636 2rgxA 206 48.96 1yzyA 413 49.02 c.146.1.1 124292 1ly1A 181 50.15 c.37.1.1 74334 1p3jA 217 50.34 c.37.1.1,g.41.2.1 94022,94023 1riiA 265 51.32 c.60.1.1 111807 1viaA 175 51.47 c.37.1.2 100754 1ls1A 295 51.85 a.24.13.1,c.37.1.10 78170,78171 1gg1A 350 51.95 c.1.10.4 29187 1v7zA 260 52.63 c.125.1.1 100488 2c31A 568 53.39 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1fj2A 232 53.75 c.69.1.14 34720 1w44A 331 53.90 c.37.1.11 114147 2qm8A 337 53.99 1p9bA 442 54.29 c.37.1.10 94385 1gz0A 253 54.56 c.116.1.1,d.79.3.3 76391,76392 2b5dX 528 56.02 a.8.3.3,c.6.2.4 127886,127887 2q62A 247 56.49 1evfA 264 57.68 d.117.1.1 40932 1of8A 370 57.89 c.1.10.4 92819 1udcA 338 57.98 c.2.1.2 29785 1q6zA 528 58.13 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1esmA 316 58.30 c.37.1.6 31953 1j3bA 529 59.33 c.91.1.1,c.109.1.1 77071,77072 1e9rA 437 60.44 c.37.1.11 64827 1bfd 528 60.65 1e4yA 214 60.85 c.37.1.1,g.41.2.1 31901,45181 1wz8A 264 61.07 c.14.1.3 121483 1yixA 265 61.55 c.1.9.12 123371 1pvdA 537 62.09 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1qh8A 478 62.10 c.92.2.3 35633 2pmkA 243 62.18 1of1A 376 64.06 c.37.1.1 103924 2rebA 352 65.09 c.37.1.11,d.48.1.1 32282,38767 1t0hB 224 65.23 c.37.1.1 106208 1bf6A 291 66.36 c.1.9.3 29065 2nwhA 317 66.36 2g1kA 176 66.54 c.37.1.2 134519 1gky 187 67.02 2r7aA 256 67.09 1gmlA 178 67.97 c.8.5.2 70273 1tib 269 68.31 2g1iA 563 68.88 2q4hA 351 69.74 d.13.1.2,d.13.1.2 139853,139854 2cbzA 237 72.12 2og2A 359 73.70 1j8yF 297 74.03 a.24.13.1,c.37.1.10 62747,62748 1f6bA 198 74.43 c.37.1.8 64986 2pt7A 330 75.28 1a5tA 334 76.26 a.80.1.1,c.37.1.20 18450,32423 1gvnB 287 77.28 c.37.1.21 76354 1zm7A 230 79.51 1ayl 541 79.69 1xwiA 322 80.17 2eu8A 216 81.05 2pfkA 320 81.50 c.89.1.1 35577 1ex7A 186 82.30 c.37.1.1 59537 1qhiA 366 84.71 c.37.1.1 31860 16pkA 415 84.92 c.86.1.1 35454 3c8dA 403 85.79 1jjvA 206 86.26 c.37.1.1 71698 2fnaA 357 87.35 a.4.5.11,c.37.1.20 133809,133810 1kgdA 180 89.20 c.37.1.1 68582 1xrjA 261 89.23 c.37.1.6 122256 2f6rA 281 89.57