# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.001115 c.37.1.1 87815 2p67A 341 0.7248 1z6gA 218 1.101 2j41A 207 1.676 1ak2A 233 1.699 c.37.1.1,g.41.2.1 31894,45195 1x6vA 630 2.324 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1n4aA 252 2.799 c.92.2.2 85317 2ga8A 359 3.130 2z0hA 197 3.620 1in4A 334 3.931 a.4.5.11,c.37.1.20 62597,62598 3be4A 217 4.120 2ax4A 198 4.324 1nijA 318 4.332 c.37.1.10,d.237.1.1 85741,85742 1n2zA 245 4.522 c.92.2.2 79865 2ccjA 205 5.348 3c8uA 208 5.549 2qt1A 207 5.578 2hhjA 267 5.708 c.60.1.1 136497 2qorA 204 6.499 1gtvA 214 6.689 c.37.1.1 70537 1ki9A 192 6.916 c.37.1.1 84404 2cdnA 201 7.524 c.37.1.1 130289 1akyA 220 8.369 c.37.1.1,g.41.2.1 31896,45197 1in6A 334 8.713 a.4.5.11,c.37.1.20 62601,62602 1ukzA 203 9.597 c.37.1.1 31840 2gzaA 361 9.860 1tq6A 413 10.19 c.37.1.8 107202 1vplA 256 10.59 c.37.1.12 113966 1z8fA 228 10.86 2yvuA 186 11.52 1ukz 203 11.56 4tmkA 213 11.78 c.37.1.1 31930 2pbrA 195 11.92 1knqA 175 12.21 c.37.1.17 72786 1np6A 174 12.31 c.37.1.10 85954 1xjcA 169 12.53 c.37.1.10 115387 2pcjA 224 13.06 1qf9A 194 13.25 c.37.1.1 31848 1efdN 266 13.79 c.92.2.1 35597 2phzA 311 14.66 1bf2 750 14.91 2q8pA 260 14.93 2vp4A 230 16.04 3b9qA 302 16.99 4xis 387 17.63 1kagA 173 18.64 c.37.1.2 72249 2axpA 173 19.17 c.37.1.1 127497 1yr2A 741 20.08 2bwjA 199 20.09 1htwA 158 20.13 c.37.1.18 71083 2qy9A 309 21.68 2f1rA 171 21.95 1zuhA 168 22.25 1qfeA 252 22.93 c.1.10.1 29167 1ylhA 560 23.02 2ze7A 253 23.56 1qqqA 264 25.25 d.117.1.1 40931 2oqyA 391 26.04 2plrA 213 26.11 1zinA 217 27.28 c.37.1.1,g.41.2.1 31915,45178 1uj2A 252 27.78 c.37.1.6 99452 1n3bA 216 28.26 c.37.1.1 79959 1p0kA 349 29.29 c.1.4.1 87648 2qw5A 335 31.21 2grjA 192 31.28 1a7j 290 31.72 1zi8A 236 32.43 1gqnA 252 34.37 c.1.10.1 90514 1of8A 370 34.48 c.1.10.4 92819 1ozhA 566 34.93 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 3tmkA 216 35.20 c.37.1.1 31920 2p5tB 253 35.53 2bdtA 189 35.88 c.37.1.25 128344 1e2kA 331 36.51 c.37.1.1 31854 2yvtA 260 37.29 2k3aA 155 37.50 2q8uA 336 37.68 3b9pA 297 38.08 2oap1 511 38.25 1xel 338 38.47 2g8oA 264 38.84 d.117.1.1 134779 1znwA 207 39.18 c.37.1.1 125412 1f0nA 285 39.28 c.69.1.3 34636 1n8fA 350 39.53 c.1.10.4 85397 2o2gA 223 40.20 2eyuA 261 40.35 1qhxA 178 40.90 c.37.1.3 31936 1p9bA 442 41.71 c.37.1.10 94385 2r79A 283 41.93 1zin 217 42.06 1njgA 250 43.14 c.37.1.20 85785 1yixA 265 43.80 c.1.9.12 123371 1qh8A 478 44.28 c.92.2.3 35633 2bklA 695 44.45 2osxA 481 45.48 2c31A 568 45.57 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2vafA 378 45.59 2g8mA 264 46.36 1xx6A 191 47.65 c.37.1.24,g.39.1.14 116139,116140 1gg1A 350 47.66 c.1.10.4 29187 2g1iA 563 48.56 1v7zA 260 48.65 c.125.1.1 100488 1xwiA 322 48.83 1ls1A 295 50.01 a.24.13.1,c.37.1.10 78170,78171 1ji0A 240 50.32 c.37.1.12 71665 1bu8A 452 50.47 b.12.1.2,c.69.1.19 23647,34795 2pzeA 229 52.26 1fj2A 232 52.60 c.69.1.14 34720 2nwhA 317 53.54 1esmA 316 54.58 c.37.1.6 31953 1bkpA 278 54.69 d.117.1.1 41029 1cp2A 269 55.89 c.37.1.10 32269 1hvyA 288 57.10 d.117.1.1 41049 2rhmA 193 57.30 1viaA 175 59.05 c.37.1.2 100754 2rebA 352 59.40 c.37.1.11,d.48.1.1 32282,38767 1gvnB 287 59.58 c.37.1.21 76354 1ly1A 181 59.82 c.37.1.1 74334 1ev5A 264 60.31 d.117.1.1 40935 1s4qA 228 60.34 c.37.1.1 98507 1e4yA 214 61.29 c.37.1.1,g.41.2.1 31901,45181 1vmaA 306 61.73 a.24.13.1,c.37.1.10 108887,108888 2hsbA 126 63.97 2rgxA 206 64.30 1zd8A 227 64.38 1t0hB 224 65.92 c.37.1.1 106208 1bf6A 291 66.85 c.1.9.3 29065 1j3bA 529 67.37 c.91.1.1,c.109.1.1 77071,77072 1qhfA 240 68.80 c.60.1.1 33960 1m1nA 491 68.90 c.92.2.3 78417 1gz0A 253 70.25 c.116.1.1,d.79.3.3 76391,76392 1bif 469 70.50 2higA 487 71.80 1ayl 541 72.03 2qm8A 337 72.25 1din 236 72.27 1yzyA 413 72.38 c.146.1.1 124292 1e9rA 437 73.24 c.37.1.11 64827 2fnaA 357 73.93 a.4.5.11,c.37.1.20 133809,133810 1q6zA 528 76.42 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1f6bA 198 76.63 c.37.1.8 64986 1tib 269 77.62 1gmlA 178 78.03 c.8.5.2 70273 2g1kA 176 78.57 c.37.1.2 134519 2q62A 247 78.71 1pvdA 537 78.80 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2r8bA 251 83.33 1zpdA 568 83.77 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1gky 187 84.27 2b5dX 528 86.31 a.8.3.3,c.6.2.4 127886,127887 1bfd 528 86.74 1ur1A 378 87.53 c.1.8.3 99804 1udcA 338 87.62 c.2.1.2 29785 2pmkA 243 88.11 1rkbA 173 88.48 c.37.1.1 111854 2f6rA 281 89.48 2hf9A 226 89.71