# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.000456 c.37.1.1 87815 2qt1A 207 0.6999 2yvuA 186 0.8768 1ak2A 233 1.057 c.37.1.1,g.41.2.1 31894,45195 2pbrA 195 1.071 1ukz 203 1.276 1ukzA 203 1.288 c.37.1.1 31840 1z6gA 218 1.515 2j41A 207 1.569 1znwA 207 1.610 c.37.1.1 125412 1n3bA 216 1.790 c.37.1.1 79959 2ga8A 359 1.790 3c8uA 208 2.104 2rhmA 193 2.188 2bwjA 199 2.481 2ccjA 205 2.501 1np6A 174 2.948 c.37.1.10 85954 1z8fA 228 3.780 1in4A 334 3.924 a.4.5.11,c.37.1.20 62597,62598 2ax4A 198 4.076 1gtvA 214 4.202 c.37.1.1 70537 1p6xA 334 5.440 c.37.1.1 94195 1qhiA 366 5.448 c.37.1.1 31860 1x6vA 630 5.669 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1zd8A 227 7.091 1in6A 334 7.148 a.4.5.11,c.37.1.20 62601,62602 2axpA 173 7.327 c.37.1.1 127497 1n4aA 252 7.636 c.92.2.2 85317 1xjcA 169 9.287 c.37.1.10 115387 1jjvA 206 9.610 c.37.1.1 71698 1e6cA 173 11.51 c.37.1.2 59296 1n2zA 245 12.72 c.92.2.2 79865 1ki9A 192 13.02 c.37.1.1 84404 2p67A 341 13.34 1zinA 217 13.80 c.37.1.1,g.41.2.1 31915,45178 1efdN 266 13.93 c.92.2.1 35597 1qf9A 194 14.98 c.37.1.1 31848 3be4A 217 15.22 1gqnA 252 15.61 c.1.10.1 90514 1bupA 386 16.14 c.55.1.1,c.55.1.1 33377,33378 2f1rA 171 16.51 2p5tB 253 16.60 1of1A 376 17.23 c.37.1.1 103924 1kagA 173 17.45 c.37.1.2 72249 1zi8A 236 18.14 2phzA 311 18.34 2ak3A 226 18.75 c.37.1.1,g.41.2.1 31892,45193 1ho1A 242 18.86 c.1.24.1 61097 1qfeA 252 19.52 c.1.10.1 29167 2hhjA 267 20.71 c.60.1.1 136497 1a7j 290 20.80 1nijA 318 21.04 c.37.1.10,d.237.1.1 85741,85742 2b5dX 528 21.50 a.8.3.3,c.6.2.4 127886,127887 1gvnB 287 21.55 c.37.1.21 76354 1st9A 143 21.69 c.47.1.10 98987 1to3A 304 23.85 c.1.10.1 107161 1zpdA 568 25.68 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1ylhA 560 26.04 1ji0A 240 26.40 c.37.1.12 71665 1s4qA 228 29.86 c.37.1.1 98507 2qjwA 176 31.37 2gzaA 361 32.89 1kay 381 33.12 1m2oA 768 33.42 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 4tmkA 213 33.51 c.37.1.1 31930 2orwA 184 33.63 1gpc 218 33.89 2c95A 196 34.72 1knqA 175 35.62 c.37.1.17 72786 2o70A 174 36.33 3bjdA 332 37.64 1xtnA 120 37.91 d.189.1.1 116028 1pujA 282 39.94 c.37.1.8 88294 1viaA 175 40.47 c.37.1.2 100754 1ly1A 181 42.22 c.37.1.1 74334 1pvdA 537 42.82 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2r7aA 256 43.24 2npnA 251 43.66 1rz3A 201 43.81 c.37.1.6 98132 1akyA 220 43.99 c.37.1.1,g.41.2.1 31896,45197 2hf9A 226 44.81 2qorA 204 45.46 1htp 131 45.72 2go7A 207 45.90 c.108.1.6 135434 1y63A 184 46.87 c.37.1.1 116494 2og2A 359 47.14 2eyuA 261 47.22 2eh3A 179 48.09 2oqyA 391 48.36 3c8dA 403 48.39 2grjA 192 48.65 1mwmA 320 49.18 c.55.1.1,c.55.1.1 79580,79581 1rkbA 173 49.33 c.37.1.1 111854 1cp2A 269 52.99 c.37.1.10 32269 1a8y 367 53.22 1xteA 154 53.48 d.189.1.1 116017 1bifA 469 53.85 c.37.1.7,c.60.1.4 31961,34003 3b9qA 302 53.87 3b9pA 297 54.19 1g8fA 511 56.04 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1m5wA 243 58.71 c.1.24.1 84836 1puoA 170 59.33 a.101.1.1,a.101.1.1 95134,95135 2g1iA 563 59.53 1ozhA 566 59.73 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1hpcA 131 62.31 b.84.1.1 28221 1a7jA 290 63.36 c.37.1.6 31952 2iyvA 184 63.54 c.37.1.2 137812 1bouA 139 63.77 a.88.1.1 18521 3crrA 323 64.01 1zpvA 91 64.14 d.58.18.7 125475 1ayl 541 64.17 1zin 217 64.27 1r0wA 286 65.24 c.37.1.12 96754 2g8lA 299 66.48 e.50.1.1 134775 2fswA 107 66.54 a.4.5.69 134042 1zuhA 168 67.68 1vplA 256 68.68 c.37.1.12 113966 1jfrA 262 69.47 c.69.1.16 34724 1z7uA 112 71.02 a.4.5.69 124672 2qy9A 309 71.84 2o2gA 223 72.33 1vhtA 218 72.69 c.37.1.1 100700 1bif 469 73.14 1gz0A 253 73.70 c.116.1.1,d.79.3.3 76391,76392 2r79A 283 75.18 2g1kA 176 76.84 c.37.1.2 134519 2hfkA 319 77.05 1p3jA 217 77.99 c.37.1.1,g.41.2.1 94022,94023 1htwA 158 78.13 c.37.1.18 71083 1nksA 194 80.98 c.37.1.1 31886 1uj2A 252 82.27 c.37.1.6 99452 1tpfA 250 82.73 c.1.1.1 28467 1din 236 83.47 1aj2 282 83.89 2hmcA 344 84.06 1j93A 353 84.24 c.1.22.1 66454 1yeyA 444 84.59 c.1.11.2,d.54.1.1 116664,116665 2nxwA 565 85.24 1tq6A 413 86.69 c.37.1.8 107202 2ar5A 121 87.07 1khtA 192 89.52 c.37.1.1 84401